Ultrahigh‐throughput FACS‐based screening for directed enzyme evolution

G Yang, SG Withers - ChemBioChem, 2009 - Wiley Online Library
Directed enzyme evolution has proven to be a powerful tool for improving a range of
properties of enzymes through consecutive rounds of diversification and selection. However …

Strategies and computational tools for improving randomized protein libraries

WM Patrick, AE Firth - Biomolecular engineering, 2005 - Elsevier
In the last decade, directed evolution has become a routine approach for engineering
proteins with novel or altered properties. Concurrently, a trend away from purely …

The human combinatorial antibody library HuCAL GOLD combines diversification of all six CDRs according to the natural immune system with a novel display method …

C Rothe, S Urlinger, C Löhning, J Prassler… - Journal of molecular …, 2008 - Elsevier
This article describes the generation of the Human Combinatorial Antibody Library HuCAL
GOLD. HuCAL GOLD is a synthetic human Fab library based on the HuCAL concept with all …

Accessing unexplored regions of sequence space in directed enzyme evolution via insertion/deletion mutagenesis

S Emond, M Petek, EJ Kay, B Heames… - Nature …, 2020 - nature.com
Insertions and deletions (InDels) are frequently observed in natural protein evolution, yet
their potential remains untapped in laboratory evolution. Here we introduce a transposon …

Directed enzyme evolution via small and effective neutral drift libraries

RD Gupta, DS Tawfik - Nature methods, 2008 - nature.com
Small libraries for directed evolution can be obtained by neutral drifts that maintain the
protein's original function, yielding highly polymorphic, stable and evolvable variants. We …

Genetic selection for protein solubility enabled by the folding quality control feature of the twin‐arginine translocation pathway

AC Fisher, W Kim, MP Delisa - Protein Science, 2006 - Wiley Online Library
One of the most vexing problems facing structural genomics efforts and the biotechnology
enterprise in general is the inability to efficiently produce functional proteins due to poor …

Gene synthesis: methods and applications

RA Hughes, AE Miklos, AD Ellington - Methods in enzymology, 2011 - Elsevier
DNA synthesis techniques and technologies are quickly becoming a cornerstone of modern
molecular biology and play a pivotal role in the field of synthetic biology. The ability to …

SwiftLib: rapid degenerate-codon-library optimization through dynamic programming

TM Jacobs, H Yumerefendi, B Kuhlman… - Nucleic acids …, 2015 - academic.oup.com
Degenerate codon (DC) libraries efficiently address the experimental library-size limitations
of directed evolution by focusing diversity toward the positions and toward the amino acids …

Construction of a large synthetic human scFv library with six diversified CDRs and high functional diversity

HY Yang, KJ Kang, JE Chung, H Shim - Molecules and cells, 2009 - Springer
Antibody phage display provides a powerful and efficient tool for the discovery and
development of monoclonal antibodies for therapeutic and other applications. Antibody …

Engineering Artificially Split Inteins for Applications in Protein Chemistry:  Biochemical Characterization of the Split Ssp DnaB Intein and Comparison to the Split Sce …

S Brenzel, T Kurpiers, HD Mootz - Biochemistry, 2006 - ACS Publications
In protein trans-splicing, an intein domain split into two polypeptide chains mediates linkage
of the flanking amino acid sequences, the N-and C-terminal exteins, with a native peptide …