Advances in auto-segmentation

CE Cardenas, J Yang, BM Anderson, LE Court… - Seminars in radiation …, 2019‏ - Elsevier
Manual image segmentation is a time-consuming task routinely performed in radiotherapy to
identify each patient's targets and anatomical structures. The efficacy and safety of the …

3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study

J Dolz, C Desrosiers, IB Ayed - NeuroImage, 2018‏ - Elsevier
This study investigates a 3D and fully convolutional neural network (CNN) for subcortical
brain structure segmentation in MRI. 3D CNN architectures have been generally avoided …

Data augmentation using learned transformations for one-shot medical image segmentation

A Zhao, G Balakrishnan, F Durand… - Proceedings of the …, 2019‏ - openaccess.thecvf.com
Image segmentation is an important task in many medical applications. Methods based on
convolutional neural networks attain state-of-the-art accuracy; however, they typically rely on …

3D whole brain segmentation using spatially localized atlas network tiles

Y Huo, Z Xu, Y **ong, K Aboud, P Parvathaneni, S Bao… - NeuroImage, 2019‏ - Elsevier
Detailed whole brain segmentation is an essential quantitative technique in medical image
analysis, which provides a non-invasive way of measuring brain regions from a clinical …

Individual-specific areal-level parcellations improve functional connectivity prediction of behavior

R Kong, Q Yang, E Gordon, A Xue, X Yan… - Cerebral …, 2021‏ - academic.oup.com
Resting-state functional magnetic resonance imaging (rs-fMRI) allows estimation of
individual-specific cortical parcellations. We have previously developed a multi-session …

[HTML][HTML] Test-time adaptable neural networks for robust medical image segmentation

N Karani, E Erdil, K Chaitanya, E Konukoglu - Medical Image Analysis, 2021‏ - Elsevier
Abstract Convolutional Neural Networks (CNNs) work very well for supervised learning
problems when the training dataset is representative of the variations expected to be …

Multi-scale patch and multi-modality atlases for whole heart segmentation of MRI

X Zhuang, J Shen - Medical image analysis, 2016‏ - Elsevier
A whole heart segmentation (WHS) method is presented for cardiac MRI. This segmentation
method employs multi-modality atlases from MRI and CT and adopts a new label fusion …

Multi-atlas segmentation of biomedical images: a survey

JE Iglesias, MR Sabuncu - Medical image analysis, 2015‏ - Elsevier
Abstract Multi-atlas segmentation (MAS), first introduced and popularized by the pioneering
work of Rohlfing, et al.(2004), Klein, et al.(2005), and Heckemann, et al.(2006), is becoming …

DeepNAT: Deep convolutional neural network for segmenting neuroanatomy

C Wachinger, M Reuter, T Klein - NeuroImage, 2018‏ - Elsevier
We introduce DeepNAT, a 3D Deep convolutional neural network for the automatic
segmentation of NeuroAnaTomy in T1-weighted magnetic resonance images. DeepNAT is …

FreeSurfer

B Fischl - Neuroimage, 2012‏ - Elsevier
FreeSurfer is a suite of tools for the analysis of neuroimaging data that provides an array of
algorithms to quantify the functional, connectional and structural properties of the human …