Protein‐protein interaction detection: methods and analysis

VS Rao, K Srinivas, GN Su**i… - International journal of …, 2014 - Wiley Online Library
Protein‐protein interaction plays key role in predicting the protein function of target protein
and drug ability of molecules. The majority of genes and proteins realize resulting …

[HTML][HTML] Protein–protein interaction prediction with deep learning: A comprehensive review

F Soleymani, E Paquet, H Viktor, W Michalowski… - Computational and …, 2022 - Elsevier
Most proteins perform their biological function by interacting with themselves or other
molecules. Thus, one may obtain biological insights into protein functions, disease …

Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1

DJ Klionsky, AK Abdel-Aziz, S Abdelfatah, M Abdellatif… - autophagy, 2021 - Taylor & Francis
In 2008, we published the first set of guidelines for standardizing research in autophagy.
Since then, this topic has received increasing attention, and many scientists have entered …

Proximity ligation assay (PLA)

MS Alam - Current protocols in immunology, 2018 - Wiley Online Library
Proximity ligation assay (PLA), also referred to as Duolink® PLA technology, permits
detection of protein‐protein interactions in situ (at distances< 40 nm) at endogenous protein …

Integrative approaches for finding modular structure in biological networks

K Mitra, AR Carvunis, SK Ramesh, T Ideker - Nature Reviews Genetics, 2013 - nature.com
A central goal of systems biology is to elucidate the structural and functional architecture of
the cell. To this end, large and complex networks of molecular interactions are being rapidly …

Gold nanoparticle-enabled biological and chemical detection and analysis

H Jans, Q Huo - Chemical Society Reviews, 2012 - pubs.rsc.org
Gold nanoparticles (AuNPs) are some of the most extensively studied nanomaterials.
Because of their unique optical, chemical, electrical, and catalytic properties, AuNPs have …

On the binding affinity of macromolecular interactions: daring to ask why proteins interact

PL Kastritis, AMJJ Bonvin - Journal of The Royal Society …, 2013 - royalsocietypublishing.org
Interactions between proteins are orchestrated in a precise and time-dependent manner,
underlying cellular function. The binding affinity, defined as the strength of these …

Bacillus thuringiensis and Its Pesticidal Crystal Proteins

E Schnepf, N Crickmore, J Van Rie… - Microbiology and …, 1998 - Am Soc Microbiol
During the past decade the pesticidal bacterium Bacillus thuringiensis has been the subject
of intensive research. These efforts have yielded considerable data about the complex …

Yeast surface display for screening combinatorial polypeptide libraries

ET Boder, KD Wittrup - Nature biotechnology, 1997 - nature.com
Display on the yeast cell wall is well suited for engineering mammalian cell-surface and
secreted proteins (eg, antibodies, receptors, cytokines) that require endoplasmic reticulum …

Methods for biological data integration: perspectives and challenges

V Gligorijević, N Pržulj - Journal of the Royal Society …, 2015 - royalsocietypublishing.org
Rapid technological advances have led to the production of different types of biological data
and enabled construction of complex networks with various types of interactions between …