Unravelling the means to an end: RNA polymerase II transcription termination

JN Kuehner, EL Pearson, C Moore - Nature reviews Molecular cell …, 2011 - nature.com
The pervasiveness of RNA synthesis in eukaryotes is largely the result of RNA polymerase II
(Pol II)-mediated transcription, and termination of its activity is necessary to partition the …

Mechanism of bacterial transcription initiation: RNA polymerase-promoter binding, isomerization to initiation-competent open complexes, and initiation of RNA …

RM Saecker, MT Record Jr, PL Dehaseth - Journal of molecular biology, 2011 - Elsevier
Initiation of RNA synthesis from DNA templates by RNA polymerase (RNAP) is a multi-step
process, in which initial recognition of promoter DNA by RNAP triggers a series of …

Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes

I Comas, S Borrell, A Roetzer, G Rose, B Malla… - Nature …, 2012 - nature.com
Epidemics of drug-resistant bacteria emerge worldwide, even as resistant strains frequently
have reduced fitness compared to their drug-susceptible counterparts. Data from model …

Crucial role and mechanism of transcription-coupled DNA repair in bacteria

BK Bharati, M Gowder, F Zheng, K Alzoubi, V Svetlov… - Nature, 2022 - nature.com
Transcription-coupled DNA repair (TCR) is presumed to be a minor sub-pathway of
nucleotide excision repair (NER) in bacteria. Global genomic repair is thought to perform the …

Structural basis of transcription-translation coupling

C Wang, V Molodtsov, E Firlar, JT Kaelber, G Blaha… - Science, 2020 - science.org
In bacteria, transcription and translation are coupled processes in which the movement of
RNA polymerase (RNAP)–synthesizing messenger RNA (mRNA) is coordinated with the …

[HTML][HTML] The magic spot: a ppGpp binding site on E. coli RNA polymerase responsible for regulation of transcription initiation

W Ross, CE Vrentas, P Sanchez-Vazquez, T Gaal… - Molecular cell, 2013 - cell.com
The global regulatory nucleotide ppGpp (" magic spot") regulates transcription from a large
subset of Escherichia coli promoters, illustrating how small molecules can control gene …

RNA polymerase accommodates a pause RNA hairpin by global conformational rearrangements that prolong pausing

JY Kang, TV Mishanina, MJ Bellecourt, RA Mooney… - Molecular cell, 2018 - cell.com
Sequence-specific pausing by RNA polymerase (RNAP) during transcription plays crucial
and diverse roles in gene expression. In bacteria, RNA structures are thought to fold within …

X-ray crystal structure of Escherichia coli RNA polymerase σ70 holoenzyme

KS Murakami - Journal of Biological Chemistry, 2013 - ASBMB
Escherichia coli RNA polymerase (RNAP) is the most studied bacterial RNAP and has been
used as the model RNAP for screening and evaluating potential RNAP-targeting antibiotics …

Opening and closing of the bacterial RNA polymerase clamp

A Chakraborty, D Wang, YW Ebright, Y Korlann… - Science, 2012 - science.org
Using single-molecule fluorescence resonance energy transfer, we have defined bacterial
RNA polymerase (RNAP) clamp conformation at each step in transcription initiation and …

A 'resource allocator'for transcription based on a highly fragmented T7 RNA polymerase

TH Segall‐Shapiro, AJ Meyer, AD Ellington… - Molecular systems …, 2014 - embopress.org
Synthetic genetic systems share resources with the host, including machinery for
transcription and translation. Phage RNA polymerases (RNAP s) decouple transcription from …