The end of gating? An introduction to automated analysis of high dimensional cytometry data

F Mair, FJ Hartmann, D Mrdjen… - European journal of …, 2016 - Wiley Online Library
Ever since its invention half a century ago, flow cytometry has been a major tool for single‐
cell analysis, fueling advances in our understanding of a variety of complex cellular systems …

Automated optimized parameters for T-distributed stochastic neighbor embedding improve visualization and analysis of large datasets

AC Belkina, CO Ciccolella, R Anno, R Halpert… - Nature …, 2019 - nature.com
Accurate and comprehensive extraction of information from high-dimensional single cell
datasets necessitates faithful visualizations to assess biological populations. A state-of-the …

CyTOF workflow: differential discovery in high-throughput high-dimensional cytometry datasets

M Nowicka, C Krieg, HL Crowell, LM Weber… - …, 2019 - pmc.ncbi.nlm.nih.gov
High-dimensional mass and flow cytometry (HDCyto) experiments have become a method
of choice for high-throughput interrogation and characterization of cell populations. Here, we …

Characterization of T-cell immune responses in clinical trials of the candidate RTS, S malaria vaccine

P Moris, E Jongert, RG van der Most - Human vaccines & …, 2018 - Taylor & Francis
The candidate malaria vaccine RTS, S has demonstrated 45.7% efficacy over 18 months
against all clinical disease in a phase-III field study of African children. RTS, S targets the …

IL-10 normalizes aberrant amygdala GABA transmission and reverses anxiety-like behavior and dependence-induced escalation of alcohol intake

RR Patel, SA Wolfe, M Bajo, S Abeynaike… - Progress in …, 2021 - Elsevier
Alcohol elicits a neuroimmune response in the brain contributing to the development and
maintenance of alcohol use disorder (AUD). While pro-inflammatory mediators initiate and …

CytoML for cross‐platform cytometry data sharing

G Finak, W Jiang, R Gottardo - Cytometry Part A, 2018 - Wiley Online Library
CytoML is an R/Bioconductor package that enables cross‐platform import, export, and
sharing of gated cytometry data. It currently supports Cytobank, FlowJo, Diva, and R …

Clozapine-induced agranulocytosis: evidence for an immune-mediated mechanism from a patient-specific in-vitro approach

F Regen, I Herzog, E Hahn, C Ruehl, N Le Bret… - Toxicology and applied …, 2017 - Elsevier
Use of the atypical antipsychotic clozapine (CZP) is compromised by the risk of potentially
fatal agranulocytosis/granulocytopenia (CIAG). To address this, we have established a …