Generative models for molecular discovery: Recent advances and challenges

C Bilodeau, W **, T Jaakkola… - Wiley …, 2022 - Wiley Online Library
Abstract Development of new products often relies on the discovery of novel molecules.
While conventional molecular design involves using human expertise to propose …

The transformational role of GPU computing and deep learning in drug discovery

M Pandey, M Fernandez, F Gentile, O Isayev… - Nature Machine …, 2022 - nature.com
Deep learning has disrupted nearly every field of research, including those of direct
importance to drug discovery, such as medicinal chemistry and pharmacology. This …

Graph neural networks: foundation, frontiers and applications

L Wu, P Cui, J Pei, L Zhao, X Guo - … of the 28th ACM SIGKDD Conference …, 2022 - dl.acm.org
The field of graph neural networks (GNNs) has seen rapid and incredible strides over the
recent years. Graph neural networks, also known as deep learning on graphs, graph …

Language models can learn complex molecular distributions

D Flam-Shepherd, K Zhu, A Aspuru-Guzik - Nature Communications, 2022 - nature.com
Deep generative models of molecules have grown immensely in popularity, trained on
relevant datasets, these models are used to search through chemical space. The …

Diff-instruct: A universal approach for transferring knowledge from pre-trained diffusion models

W Luo, T Hu, S Zhang, J Sun, Z Li… - Advances in Neural …, 2024 - proceedings.neurips.cc
Due to the ease of training, ability to scale, and high sample quality, diffusion models (DMs)
have become the preferred option for generative modeling, with numerous pre-trained …

Hierarchical generation of molecular graphs using structural motifs

W **, R Barzilay, T Jaakkola - International conference on …, 2020 - proceedings.mlr.press
Graph generation techniques are increasingly being adopted for drug discovery. Previous
graph generation approaches have utilized relatively small molecular building blocks such …

Generative models for de novo drug design

X Tong, X Liu, X Tan, X Li, J Jiang, Z **ong… - Journal of Medicinal …, 2021 - ACS Publications
Artificial intelligence (AI) is booming. Among various AI approaches, generative models
have received much attention in recent years. Inspired by these successes, researchers are …

A gentle introduction to deep learning for graphs

D Bacciu, F Errica, A Micheli, M Podda - Neural Networks, 2020 - Elsevier
The adaptive processing of graph data is a long-standing research topic that has been lately
consolidated as a theme of major interest in the deep learning community. The snap …

Generative machine learning for de novo drug discovery: A systematic review

DD Martinelli - Computers in Biology and Medicine, 2022 - Elsevier
Recent research on artificial intelligence indicates that machine learning algorithms can
auto-generate novel drug-like molecules. Generative models have revolutionized de novo …

Deep learning approaches for de novo drug design: An overview

M Wang, Z Wang, H Sun, J Wang, C Shen… - Current opinion in …, 2022 - Elsevier
De novo drug design is the process of generating novel lead compounds with desirable
pharmacological and physiochemical properties. The application of deep learning (DL) in de …