[HTML][HTML] How to build the virtual cell with artificial intelligence: Priorities and opportunities

C Bunne, Y Roohani, Y Rosen, A Gupta, X Zhang… - Cell, 2024 - cell.com
Cells are essential to understanding health and disease, yet traditional models fall short of
modeling and simulating their function and behavior. Advances in AI and omics offer …

[HTML][HTML] A decade of molecular cell atlases

SR Quake - Trends in genetics, 2022 - cell.com
In recent years there has been tremendous progress towards deep molecular
characterization of cell types using single-cell transcriptome sequencing, creating so-called …

Integrating spatial and single-cell transcriptomics data using deep generative models with SpatialScope

X Wan, J **ao, SST Tam, M Cai, R Sugimura… - Nature …, 2023 - nature.com
The rapid emergence of spatial transcriptomics (ST) technologies is revolutionizing our
understanding of tissue spatial architecture and biology. Although current ST methods …

Multilingual translation for zero-shot biomedical classification using BioTranslator

H Xu, A Woicik, H Poon, RB Altman, S Wang - Nature Communications, 2023 - nature.com
Existing annotation paradigms rely on controlled vocabularies, where each data instance is
classified into one term from a predefined set of controlled vocabularies. This paradigm …

Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets

J Zhao, G Wang, J Ming, Z Lin, Y Wang… - Nature computational …, 2022 - nature.com
The rapid emergence of large-scale atlas-level single-cell RNA-seq datasets presents
remarkable opportunities for broad and deep biological investigations through integrative …

COSMOS: a platform for real-time morphology-based, label-free cell sorting using deep learning

M Salek, N Li, HP Chou, K Saini, A Jovic… - Communications …, 2023 - nature.com
Cells are the singular building blocks of life, and a comprehensive understanding of
morphology, among other properties, is crucial to the assessment of underlying …

From monkey single-cell atlases into a broader biomedical perspective

X Zou, X Dai, AFA Mentis, MA Esteban, L Liu… - Life …, 2022 - academic.oup.com
The cell is the fundamental constituent unit of a mammal which, in turn, depends on the
cooperative work of various cells to compose intricate life activities. Cells harbor diverse …

SPLASH: a statistical, reference-free genomic algorithm unifies biological discovery

K Chaung, TZ Baharav, G Henderson, IN Zheludev… - Cell, 2023 - cell.com
Today's genomics workflows typically require alignment to a reference sequence, which
limits discovery. We introduce a unifying paradigm, SPLASH (Statistically Primary aLignment …

[HTML][HTML] Application of single-cell RNA sequencing on human testicular samples: a comprehensive review

F Dong, P **, Y Ma, XF Chen - International Journal of Biological …, 2023 - ncbi.nlm.nih.gov
So far there has been no comprehensive review using systematic literature search strategies
to show the application of single-cell RNA sequencing (scRNA-seq) in the human testis of …

Antibodies as drugs—a Keystone Symposia report

J Cable, EO Saphire, AC Hayday… - Annals of the New …, 2023 - Wiley Online Library
Therapeutic antibodies have broad indications across diverse disease states, such as
oncology, autoimmune diseases, and infectious diseases. New research continues to …