Riemann manifold langevin and hamiltonian monte carlo methods

M Girolami, B Calderhead - … the Royal Statistical Society Series B …, 2011 - academic.oup.com
The paper proposes Metropolis adjusted Langevin and Hamiltonian Monte Carlo sampling
methods defined on the Riemann manifold to resolve the shortcomings of existing Monte …

TAPAS: an open-source software package for translational neuromodeling and computational psychiatry

S Frässle, EA Aponte, S Bollmann… - Frontiers in …, 2021 - frontiersin.org
Psychiatry faces fundamental challenges with regard to mechanistically guided differential
diagnosis, as well as prediction of clinical trajectories and treatment response of individual …

[LLIBRE][B] Molecular evolution: a statistical approach

Z Yang - 2014 - books.google.com
Studies of evolution at the molecular level have experienced phenomenal growth in the last
few decades, due to rapid accumulation of genetic sequence data, improved computer …

Control functionals for Monte Carlo integration

CJ Oates, M Girolami, N Chopin - Journal of the Royal Statistical …, 2017 - academic.oup.com
A non-parametric extension of control variates is presented. These leverage gradient
information on the sampling density to achieve substantial variance reduction. It is not …

Detection of cosmological 21 cm emission with the Canadian hydrogen intensity map** experiment

M Amiri, K Bandura, T Chen, M Deng… - The Astrophysical …, 2023 - iopscience.iop.org
We present a detection of 21 cm emission from large-scale structure (LSS) between redshift
0.78 and 1.43 made with the Canadian Hydrogen Intensity Map** Experiment. Radio …

[HTML][HTML] A nondegenerate code of deleterious variants in Mendelian loci contributes to complex disease risk

DR Blair, CS Lyttle, JM Mortensen, CF Bearden… - Cell, 2013 - cell.com
Although countless highly penetrant variants have been associated with Mendelian
disorders, the genetic etiologies underlying complex diseases remain largely unresolved. By …

Estimating the evidence–a review

N Friel, J Wyse - Statistica Neerlandica, 2012 - Wiley Online Library
The model evidence is a vital quantity in the comparison of statistical models under the
Bayesian paradigm. This study presents a review of commonly used methods. We outline …

[HTML][HTML] Computational neuroimaging strategies for single patient predictions

KE Stephan, F Schlagenhauf, QJM Huys, S Raman… - Neuroimage, 2017 - Elsevier
Neuroimaging increasingly exploits machine learning techniques in an attempt to achieve
clinically relevant single-subject predictions. An alternative to machine learning, which tries …

Probabilistic integration

FX Briol, CJ Oates, M Girolami, MA Osborne… - Statistical Science, 2019 - JSTOR
A research frontier has emerged in scientific computation, wherein discretisation error is
regarded as a source of epistemic uncertainty that can be modelled. This raises several …

Reconstructing gene regulatory dynamics from high-dimensional single-cell snapshot data

A Ocone, L Haghverdi, NS Mueller, FJ Theis - Bioinformatics, 2015 - academic.oup.com
Motivation: High-dimensional single-cell snapshot data are becoming widespread in the
systems biology community, as a mean to understand biological processes at the cellular …