Top-down proteomics

DS Roberts, JA Loo, YO Tsybin, X Liu, S Wu… - Nature Reviews …, 2024 - nature.com
Proteoforms, which arise from post-translational modifications, genetic polymorphisms and
RNA splice variants, play a pivotal role as drivers in biology. Understanding proteoforms is …

Novel strategies to address the challenges in top-down proteomics

JA Melby, DS Roberts, EJ Larson… - Journal of the …, 2021 - ACS Publications
Top-down mass spectrometry (MS)-based proteomics is a powerful technology for
comprehensively characterizing proteoforms to decipher post-translational modifications …

Induced pluripotent stem cell-derived cardiomyocyte in vitro models: benchmarking progress and ongoing challenges

JK Ewoldt, SJ DePalma, ME Jewett, MÇ Karakan… - Nature …, 2024 - nature.com
Recent innovations in differentiating cardiomyocytes from human induced pluripotent stem
cells (hiPSCs) have unlocked a viable path to creating in vitro cardiac models. Currently …

Human iPSC-engineered cardiac tissue platform faithfully models important cardiac physiology

WJ de Lange, ET Farrell, CR Kreitzer… - American Journal …, 2021 - journals.physiology.org
Cardiomyocytes derived from human induced pluripotent stem cells (hiPSC-CM) may
provide an important bridge between animal models and the intact human myocardium …

Simultaneous widefield voltage and dye-free optical map** quantifies electromechanical waves in human induced pluripotent stem cell-derived cardiomyocytes

W Liu, JL Han, J Tomek, G Bub, E Entcheva - ACS photonics, 2023 - ACS Publications
Coupled electromechanical waves define a heart's function in health and diseases. Optical
map** of electrical waves using fluorescent labels offers mechanistic insights into cardiac …

Matrix Architecture and Mechanics Regulate Myofibril Organization, Costamere Assembly, and Contractility in Engineered Myocardial Microtissues

SJ DePalma, J Jilberto, AE Stis, DD Huang… - Advanced …, 2024 - Wiley Online Library
The mechanical function of the myocardium is defined by cardiomyocyte contractility and the
biomechanics of the extracellular matrix (ECM). Understanding this relationship remains an …

Quantitative top-down proteomics by isobaric labeling with thiol-directed tandem mass tags

K Winkels, T Koudelka, A Tholey - Journal of Proteome Research, 2021 - ACS Publications
While identification-centric (qualitative) top-down proteomics (TDP) has seen rapid progress
in the recent past, the quantification of intact proteoforms within complex proteomes is still …

cMyBP-C ablation in human engineered cardiac tissue causes progressive Ca2+-handling abnormalities

WJ De Lange, ET Farrell, JJ Hernandez… - Journal of General …, 2023 - rupress.org
Truncation mutations in cardiac myosin binding protein C (cMyBP-C) are common causes of
hypertrophic cardiomyopathy (HCM). Heterozygous carriers present with classical HCM …

Multiomics method enabled by sequential metabolomics and proteomics for human pluripotent stem-cell-derived cardiomyocytes

EF Bayne, AD Simmons, DS Roberts… - Journal of proteome …, 2021 - ACS Publications
Human pluripotent stem-cell-derived cardiomyocytes (hPSC-CMs) show immense promise
for patient-specific disease modeling, cardiotoxicity screening, and regenerative therapy …

Ion mobility coupled to a time-of-flight mass analyzer combined with fragment intensity predictions improves identification of classical bioactive peptides and small …

MKR Peeters, G Baggerman, R Gabriels… - Frontiers in cell and …, 2021 - frontiersin.org
Bioactive peptides exhibit key roles in a wide variety of complex processes, such as
regulation of body weight, learning, aging, and innate immune response. Next to the …