Mechanisms of assembly and remodelling of the extracellular matrix

A Naba - Nature Reviews Molecular Cell Biology, 2024 - nature.com
The extracellular matrix (ECM) is the complex meshwork of proteins and glycans that forms
the scaffold that surrounds and supports cells. It exerts key roles in all aspects of metazoan …

Spatiotemporal omics for biology and medicine

L Liu, A Chen, Y Li, J Mulder, H Heyn, X Xu - Cell, 2024 - cell.com
The completion of the Human Genome Project has provided a foundational blueprint for
understanding human life. Nonetheless, understanding the intricate mechanisms through …

CZ CELLxGENE Discover: a single-cell data platform for scalable exploration, analysis and modeling of aggregated data

CZI Cell Science Program, S Abdulla… - Nucleic Acids …, 2025 - academic.oup.com
Hundreds of millions of single cells have been analyzed using high-throughput
transcriptomic methods. The cumulative knowledge within these datasets provides an …

STalign: Alignment of spatial transcriptomics data using diffeomorphic metric map**

K Clifton, M Anant, G Aihara, L Atta, OK Aimiuwu… - Nature …, 2023 - nature.com
Spatial transcriptomics (ST) technologies enable high throughput gene expression
characterization within thin tissue sections. However, comparing spatial observations across …

Spatial transcriptomics in health and disease

S Jain, MT Eadon - Nature Reviews Nephrology, 2024 - nature.com
The ability to localize hundreds of macromolecules to discrete locations, structures and cell
types in a tissue is a powerful approach to understand the cellular and spatial organization …

Multi-omic profiling of follicular lymphoma reveals changes in tissue architecture and enhanced stromal remodeling in high-risk patients

AJ Radtke, E Postovalova, A Varlamova, A Bagaev… - Cancer Cell, 2024 - cell.com
Follicular lymphoma (FL) is a generally incurable malignancy that evolves from
developmentally blocked germinal center (GC) B cells. To promote survival and immune …

The Human Cell Atlas from a cell census to a unified foundation model

JE Rood, S Wynne, L Robson, A Hupalowska… - Nature, 2024 - nature.com
With the convergence in exciting advances in molecular and spatial profiling methods and
new computational approaches leveraging artificial intelligence and machine learning …

Spatial multi-omics: novel tools to study the complexity of cardiovascular diseases

P Kiessling, C Kuppe - Genome Medicine, 2024 - Springer
Spatial multi-omic studies have emerged as a promising approach to comprehensively
analyze cells in tissues, enabling the joint analysis of multiple data modalities like …

T cell-mediated curation and restructuring of tumor tissue coordinates an effective immune response

JW Hickey, M Haist, N Horowitz, C Caraccio, Y Tan… - Cell reports, 2023 - cell.com
Antigen-specific T cells traffic to, are influenced by, and create unique cellular
microenvironments. Here we characterize these microenvironments over time with …

Influence of intersignaling crosstalk on the intracellular localization of YAP/TAZ in lung cells

IA Govorova, SY Nikitochkina, EA Vorotelyak - Cell Communication and …, 2024 - Springer
A cell is a dynamic system in which various processes occur simultaneously. In particular,
intra-and intercellular signaling pathway crosstalk has a significant impact on a cell's life …