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PANTHER: Making genome‐scale phylogenetics accessible to all
Phylogenetics is a powerful tool for analyzing protein sequences, by inferring their
evolutionary relationships to other proteins. However, phylogenetics analyses can be …
evolutionary relationships to other proteins. However, phylogenetics analyses can be …
SBML Level 3: an extensible format for the exchange and reuse of biological models
Abstract Systems biology has experienced dramatic growth in the number, size, and
complexity of computational models. To reproduce simulation results and reuse models …
complexity of computational models. To reproduce simulation results and reuse models …
PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API
Abstract PANTHER (Protein Analysis Through Evolutionary Relationships, http://www.
pantherdb. org) is a resource for the evolutionary and functional classification of protein …
pantherdb. org) is a resource for the evolutionary and functional classification of protein …
WikiPathways: connecting communities
Abstract WikiPathways (https://www. wikipathways. org) is a biological pathway database
known for its collaborative nature and open science approaches. With the core idea of the …
known for its collaborative nature and open science approaches. With the core idea of the …
From hype to reality: data science enabling personalized medicine
Abstract Background Personalized, precision, P4, or stratified medicine is understood as a
medical approach in which patients are stratified based on their disease subtype, risk …
medical approach in which patients are stratified based on their disease subtype, risk …
[HTML][HTML] Oxylipin profiling for clinical research: Current status and future perspectives
Oxylipins are potent lipid mediators with increasing interest in clinical research. They are
usually measured in systemic circulation and can provide a wealth of information regarding …
usually measured in systemic circulation and can provide a wealth of information regarding …
Quantitative and logic modelling of molecular and gene networks
N Le Novere - Nature Reviews Genetics, 2015 - nature.com
Behaviours of complex biomolecular systems are often irreducible to the elementary
properties of their individual components. Explanatory and predictive mathematical models …
properties of their individual components. Explanatory and predictive mathematical models …
Cytoscape: software for visualization and analysis of biological networks
Substantial progress has been made in the field of “omics” research (eg, Genomics,
Transcriptomics, Proteomics, and Metabolomics), leading to a vast amount of biological …
Transcriptomics, Proteomics, and Metabolomics), leading to a vast amount of biological …
Integration of biological networks and gene expression data using Cytoscape
Cytoscape is a free software package for visualizing, modeling and analyzing molecular and
genetic interaction networks. This protocol explains how to use Cytoscape to analyze the …
genetic interaction networks. This protocol explains how to use Cytoscape to analyze the …
A comprehensive pathway map of epidermal growth factor receptor signaling
The epidermal growth factor receptor (EGFR) signaling pathway is one of the most important
pathways that regulate growth, survival, proliferation, and differentiation in mammalian cells …
pathways that regulate growth, survival, proliferation, and differentiation in mammalian cells …