Advances in applying computer-aided drug design for neurodegenerative diseases

MM Salman, Z Al-Obaidi, P Kitchen, A Loreto… - International journal of …, 2021 - mdpi.com
Neurodegenerative diseases (NDs) including Alzheimer's disease, Parkinson's disease,
amyotrophic lateral sclerosis, and Huntington's disease are incurable and affect millions of …

The second wave of synthetic biology: from modules to systems

PEM Purnick, R Weiss - Nature reviews Molecular cell biology, 2009 - nature.com
Synthetic biology is a research field that combines the investigative nature of biology with
the constructive nature of engineering. Efforts in synthetic biology have largely focused on …

[KİTAP][B] Evolution: a view from the 21st century

JA Shapiro - 2011 - books.google.com
James A. Shapiro proposes an important new paradigm for understanding biological
evolution, the core organizing principle of biology. Shapiro introduces crucial new molecular …

Programmable cells: interfacing natural and engineered gene networks

H Kobayashi, M Kaern, M Araki… - Proceedings of the …, 2004 - National Acad Sciences
Novel cellular behaviors and characteristics can be obtained by coupling engineered gene
networks to the cell's natural regulatory circuitry through appropriately designed input and …

Predictive behavior within microbial genetic networks

I Tagkopoulos, YC Liu, S Tavazoie - science, 2008 - science.org
The homeostatic framework has dominated our understanding of cellular physiology. We
question whether homeostasis alone adequately explains microbial responses to …

Foundations for the design and implementation of synthetic genetic circuits

AL Slusarczyk, A Lin, R Weiss - Nature Reviews Genetics, 2012 - nature.com
Synthetic gene circuits are designed to program new biological behaviour, dynamics and
logic control. For all but the simplest synthetic phenotypes, this requires a structured …

Dynamic properties of network motifs contribute to biological network organization

RJ Prill, PA Iglesias, A Levchenko - PLoS biology, 2005 - journals.plos.org
Biological networks, such as those describing gene regulation, signal transduction, and
neural synapses, are representations of large-scale dynamic systems. Discovery of …

Revealing networks from dynamics: an introduction

M Timme, J Casadiego - Journal of Physics A: Mathematical and …, 2014 - iopscience.iop.org
What can we learn from the collective dynamics of a complex network about its interaction
topology? Taking the perspective from nonlinear dynamics, we briefly review recent …

Directed evolution of microbial communities

Á Sánchez, JCC Vila, CY Chang… - Annual review of …, 2021 - annualreviews.org
Directed evolution is a form of artificial selection that has been used for decades to find
biomolecules and organisms with new or enhanced functional traits. Directed evolution can …

Molecular titration and ultrasensitivity in regulatory networks

NE Buchler, M Louis - Journal of molecular biology, 2008 - Elsevier
Protein sequestration occurs when an active protein is sequestered by a repressor into an
inactive complex. Using mathematical and computational modeling, we show how this …