Marine cyclic peptides: Antimicrobial activity and synthetic strategies

R Ribeiro, E Pinto, C Fernandes, E Sousa - Marine Drugs, 2022 - mdpi.com
Oceans are a rich source of structurally unique bioactive compounds from the perspective of
potential therapeutic agents. Marine peptides are a particularly interesting group of …

Natural products from thioester reductase containing biosynthetic pathways

MW Mullowney, RA McClure, MT Robey… - Natural product …, 2018 - pubs.rsc.org
Covering: up to 2018 Thioester reductase domains catalyze two-and four-electron
reductions to release natural products following assembly on nonribosomal peptide …

[HTML][HTML] MLACP: machine-learning-based prediction of anticancer peptides

B Manavalan, S Basith, TH Shin, S Choi, MO Kim… - Oncotarget, 2017 - ncbi.nlm.nih.gov
Cancer is the second leading cause of death globally, and use of therapeutic peptides to
target and kill cancer cells has received considerable attention in recent years. Identification …

iBCE-EL: a new ensemble learning framework for improved linear B-cell epitope prediction

B Manavalan, RG Govindaraj, TH Shin… - Frontiers in …, 2018 - frontiersin.org
Identification of B-cell epitopes (BCEs) is a fundamental step for epitope-based vaccine
development, antibody production, and disease prevention and diagnosis. Due to the …

AIPpred: sequence-based prediction of anti-inflammatory peptides using random forest

B Manavalan, TH Shin, MO Kim, G Lee - Frontiers in pharmacology, 2018 - frontiersin.org
The use of therapeutic peptides in various inflammatory diseases and autoimmune
disorders has received considerable attention; however, the identification of anti …

PVP-SVM: sequence-based prediction of phage virion proteins using a support vector machine

B Manavalan, TH Shin, G Lee - Frontiers in microbiology, 2018 - frontiersin.org
Accurately identifying bacteriophage virion proteins from uncharacterized sequences is
important to understand interactions between the phage and its host bacteria in order to …

PIP-EL: a new ensemble learning method for improved proinflammatory peptide predictions

B Manavalan, TH Shin, MO Kim, G Lee - Frontiers in immunology, 2018 - frontiersin.org
Proinflammatory cytokines have the capacity to increase inflammatory reaction and play a
central role in first line of defence against invading pathogens. Proinflammatory inducing …

DHSpred: support-vector-machine-based human DNase I hypersensitive sites prediction using the optimal features selected by random forest

B Manavalan, TH Shin, G Lee - Oncotarget, 2017 - pmc.ncbi.nlm.nih.gov
DNase I hypersensitive sites (DHSs) are genomic regions that provide important information
regarding the presence of transcriptional regulatory elements and the state of chromatin …

Acremopeptaibols A–F, 16-Residue Peptaibols from the Sponge-Derived Acremonium sp. IMB18-086 Cultivated with Heat-Killed Pseudomonas aeruginosa

X Hao, S Li, J Ni, G Wang, F Li, Q Li… - Journal of Natural …, 2021 - ACS Publications
Six new 16-residue peptaibols, acremopeptaibols A–F (1–6), along with five known
compounds, were isolated from the cultures of the sponge-associated fungus Acremonium …

Pentadecaibins I–V: 15-Residue Peptaibols Produced by a Marine-Derived Trichoderma sp. of the Harzianum Clade

AI Van Bohemen, N Ruiz… - Journal of Natural …, 2021 - ACS Publications
In the course of investigations on peptaibol chemodiversity from marine-derived
Trichoderma spp., five new 15-residue peptaibols named pentadecaibins I–V (1–5) were …