Know your molecule: pharmacological characterization of drug candidates to enhance efficacy and reduce late-stage attrition

T Kenakin - Nature Reviews Drug Discovery, 2024 - nature.com
Despite advances in chemical, computational and biological sciences, the rate of attrition of
drug candidates in clinical development is still high. A key point in the small-molecule …

Discovering symptom patterns of COVID-19 patients using association rule mining

M Tandan, Y Acharya, S Pokharel… - Computers in biology and …, 2021 - Elsevier
Background The COVID-19 pandemic is a significant public health crisis that is hitting hard
on people's health, well-being, and freedom of movement, and affecting the global economy …

A general hypergraph learning algorithm for drug multi-task predictions in micro-to-macro biomedical networks

S **, Y Hong, L Zeng, Y Jiang, Y Lin… - PLOS Computational …, 2023 - journals.plos.org
The powerful combination of large-scale drug-related interaction networks and deep
learning provides new opportunities for accelerating the process of drug discovery …

[HTML][HTML] idse-HE: Hybrid embedding graph neural network for drug side effects prediction

L Yu, M Cheng, W Qiu, X **ao, W Lin - Journal of biomedical informatics, 2022 - Elsevier
In drug development, unexpected side effects are the main reason for the failure of
candidate drug trials. Discovering potential side effects of drugs in silico can improve the …

Link prediction of time-evolving network based on node ranking

X Wu, J Wu, Y Li, Q Zhang - Knowledge-Based Systems, 2020 - Elsevier
Many real-world networks belong to the kind that evolves over time. So it is very meaningful
and challenging to predict whether the link will occur in the network of future time. In this …

Arch: Large-scale knowledge graph via aggregated narrative codified health records analysis

Z Gan, D Zhou, E Rush, VA Panickan, YL Ho… - Journal of Biomedical …, 2025 - Elsevier
Objective: Electronic health record (EHR) systems contain a wealth of clinical data stored as
both codified data and free-text narrative notes (NLP). The complexity of EHR presents …

[HTML][HTML] Semi-supervised regression using diffusion on graphs

M Timilsina, A Figueroa, M d'Aquin, H Yang - Applied Soft Computing, 2021 - Elsevier
In real-world machine learning applications, unlabeled training data are readily available,
but labeled data are expensive and hard to obtain. Therefore, semi-supervised learning …

Semi-supervised hierarchical drug embedding in hyperbolic space

K Yu, S Visweswaran… - Journal of chemical …, 2020 - ACS Publications
Learning accurate drug representations is essential for tasks such as computational drug
repositioning and prediction of drug side effects. A drug hierarchy is a valuable source that …

[HTML][HTML] MSDSE: predicting drug-side effects based on multi-scale features and deep multi-structure neural network

L Yu, Z Xu, W Qiu, X **ao - Computers in Biology and Medicine, 2024 - Elsevier
Unexpected side effects may accompany the research stage and post-marketing of drugs.
These accidents lead to drug development failure and even endanger patients' health. Thus …

Knowledge Graphs, Clinical Trials, Dataspace, and AI: Uniting for Progressive Healthcare Innovation

M Timilsina, S Alsamhi, R Haque… - … Conference on Big …, 2023 - ieeexplore.ieee.org
Amidst prevailing healthcare challenges, a dynamic solution emerges, fusing knowledge
graph technology, clinical trials optimization, dataspace integration, and AI innovation. This …