Eukaryotic translation initiation factors as promising targets in cancer therapy
P Hao, J Yu, R Ward, Y Liu, Q Hao, S An… - Cell Communication and …, 2020 - Springer
The regulation of the translation of messenger RNA (mRNA) in eukaryotic cells is critical for
gene expression, and occurs principally at the initiation phase which is mainly regulated by …
gene expression, and occurs principally at the initiation phase which is mainly regulated by …
Translational control by ribosome pausing in bacteria: how a non-uniform pace of translation affects protein production and folding
E Samatova, J Daberger, M Liutkute… - Frontiers in …, 2021 - frontiersin.org
Protein homeostasis of bacterial cells is maintained by coordinated processes of protein
production, folding, and degradation. Translational efficiency of a given mRNA depends on …
production, folding, and degradation. Translational efficiency of a given mRNA depends on …
Structural basis of early translocation events on the ribosome
Peptide-chain elongation during protein synthesis entails sequential aminoacyl-tRNA
selection and translocation reactions that proceed rapidly (2–20 per second) and with a low …
selection and translocation reactions that proceed rapidly (2–20 per second) and with a low …
A versatile active learning workflow for optimization of genetic and metabolic networks
Optimization of biological networks is often limited by wet lab labor and cost, and the lack of
convenient computational tools. Here, we describe METIS, a versatile active machine …
convenient computational tools. Here, we describe METIS, a versatile active machine …
Quality control of protein synthesis in the early elongation stage
A Nagao, Y Nakanishi, Y Yamaguchi, Y Mishina… - Nature …, 2023 - nature.com
In the early stage of bacterial translation, peptidyl-tRNAs frequently dissociate from the
ribosome (pep-tRNA drop-off) and are recycled by peptidyl-tRNA hydrolase. Here, we …
ribosome (pep-tRNA drop-off) and are recycled by peptidyl-tRNA hydrolase. Here, we …
Strategies to overcome the challenges of low or no expression of heterologous proteins in Escherichia coli
R Jiang, S Yuan, Y Zhou, Y Wei, F Li, M Wang… - Biotechnology …, 2024 - Elsevier
Protein expression is a critical process in diverse biological systems. For Escherichia coli, a
widely employed microbial host in industrial catalysis and healthcare, researchers often face …
widely employed microbial host in industrial catalysis and healthcare, researchers often face …
Exploring the synthetic biology potential of bacteriophages for engineering non-model bacteria
Non-model bacteria like Pseudomonas putida, Lactococcus lactis and other species have
unique and versatile metabolisms, offering unique opportunities for Synthetic Biology …
unique and versatile metabolisms, offering unique opportunities for Synthetic Biology …
Comprehensive quantitative modeling of translation efficiency in a genome‐reduced bacterium
Translation efficiency has been mainly studied by ribosome profiling, which only provides an
incomplete picture of translation kinetics. Here, we integrated the absolute quantifications of …
incomplete picture of translation kinetics. Here, we integrated the absolute quantifications of …
Deep learning prediction of ribosome profiling with Translatomer reveals translational regulation and interprets disease variants
Gene expression involves transcription and translation. Despite large datasets and
increasingly powerful methods devoted to calculating genetic variants' effects on …
increasingly powerful methods devoted to calculating genetic variants' effects on …
Large-scale analysis of mRNA sequences localized near the start and amber codons and their impact on the diversity of mRNA display libraries
S Umemoto, T Kondo, T Fu**o, G Hayashi… - Nucleic Acids …, 2023 - academic.oup.com
Extremely diverse libraries are essential for effectively selecting functional peptides or
proteins, and mRNA display technology is a powerful tool for generating such libraries with …
proteins, and mRNA display technology is a powerful tool for generating such libraries with …