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[HTML][HTML] Classical molecular dynamics
This issue of JCP highlights both developments in and applications of classical molecular
simulation in 67 articles. A recent issue of JCP focused on electronic structure software …
simulation in 67 articles. A recent issue of JCP focused on electronic structure software …
Coarse-graining organic semiconductors: the path to multiscale design
NE Jackson - The Journal of Physical Chemistry B, 2020 - ACS Publications
Four decades of molecular theory and computation have helped form the modern
understanding of the physical chemistry of organic semiconductors. Whereas these efforts …
understanding of the physical chemistry of organic semiconductors. Whereas these efforts …
Tracking the structural dynamics of proteins with time-resolved X-ray solution scattering
Relevant events during protein function such as ligand binding/release and interaction with
substrates or with light are often accompanied by out-of-equilibrium structural dynamics …
substrates or with light are often accompanied by out-of-equilibrium structural dynamics …
Ligand-centered to metal-centered activation of a Rh (III) photosensitizer revealed by ab initio molecular dynamics simulations
IB Losada, P Persson - Chemical Science, 2023 - pubs.rsc.org
Excited state evolution of the rhodium (III) complex [Rh (III)(phen) 2 (NH3) 2] 2+(phen= 1, 10-
phenanthroline) has been investigated theoretically to gain a better understanding of light …
phenanthroline) has been investigated theoretically to gain a better understanding of light …
Unfolding bovine α-lactalbumin with T-jump: Characterizing disordered intermediates via time-resolved x-ray solution scattering and molecular dynamics simulations
The protein folding process often proceeds through partially folded transient states.
Therefore, a structural understanding of these disordered states is crucial for develo** …
Therefore, a structural understanding of these disordered states is crucial for develo** …
Eliminating finite-size effects on the calculation of x-ray scattering from molecular dynamics simulations
Structural studies using x-ray scattering methods for investigating molecules in solution are
shifting focus toward describing the role and effects of the surrounding solvent. However …
shifting focus toward describing the role and effects of the surrounding solvent. However …
Early Folding Dynamics of i-Motif DNA Revealed by pH-Jump Time-Resolved X-ray Solution Scattering
The i-motif is a pH-responsive cytosine-rich oligonucleotide sequence that forms, under
acidic conditions, a quadruplex structure. This tunable structural switching has made the i …
acidic conditions, a quadruplex structure. This tunable structural switching has made the i …
Molecular features of hydration layers: Insights from simulation, microscopy, and spectroscopy
Water molecules are orderly when stacked on a material surface in a liquid or under ambient
conditions. Such a hydration layer plays a crucial role in various chemical and biological …
conditions. Such a hydration layer plays a crucial role in various chemical and biological …
[HTML][HTML] Toward a quantitative description of solvation structure: a framework for differential solution scattering measurements
Appreciating that the role of the solute–solvent and other outer-sphere interactions is
essential for understanding chemistry and chemical dynamics in solution, experimental …
essential for understanding chemistry and chemical dynamics in solution, experimental …
Fitting high-resolution electron density maps from atomic models to solution scattering data
Solution scattering techniques, such as small-and wide-angle X-ray scattering (SWAXS),
provide valuable insights into the structure and dynamics of biological macromolecules in …
provide valuable insights into the structure and dynamics of biological macromolecules in …