Gene Sets Net Correlations Analysis (GSNCA): a multivariate differential coexpression test for gene sets

Y Rahmatallah, F Emmert-Streib, G Glazko - Bioinformatics, 2014 - academic.oup.com
Motivation: To date, gene set analysis approaches primarily focus on identifying differentially
expressed gene sets (pathways). Methods for identifying differentially coexpressed …

[HTML][HTML] Association of key genes and pathways with atopic dermatitis by bioinformatics analysis

J Zhu, Z Wang, F Chen - Medical science monitor: international …, 2019 - ncbi.nlm.nih.gov
Background Atopic dermatitis is a chronic inflammatory disease of the skin. It has a high
prevalence worldwide and affected persons are prone to recurrent attacks, seriously …

[HTML][HTML] Identification of key genes and pathways involved in vitiligo development based on integrated analysis

Z Lei, S Yu, Y Ding, J Liang, Y Halifu, F **ang… - Medicine, 2020 - journals.lww.com
Identification of key genes and pathways involved in vitilig... : Medicine Identification of key
genes and pathways involved in vitiligo development based on integrated analysis : Medicine …

Key genes and functional coexpression modules involved in the pathogenesis of systemic lupus erythematosus

S Yan, W Wang, G Gao, M Cheng… - Journal of Cellular …, 2018 - Wiley Online Library
We performed a systematic review of genome‐wide gene expression datasets to identify key
genes and functional modules involved in the pathogenesis of systemic lupus …

GSNFS: Gene subnetwork biomarker identification of lung cancer expression data

N Doungpan, W Engchuan, JH Chan… - BMC medical genomics, 2016 - Springer
Background Gene expression has been used to identify disease gene biomarkers, but there
are ongoing challenges. Single gene or gene-set biomarkers are inadequate to provide …

Consensus clustering of gene expression profiles in peripheral blood of acute ischemic stroke patients

Z Yang, G Wang, N Luo, CK Tsang, L Huang - Frontiers in Neurology, 2022 - frontiersin.org
Acute ischemic stroke (AIS) is a primary cause of mortality and morbidity worldwide.
Currently, no clinically approved immune intervention is available for AIS treatment, partly …

Identification of genes and functional coexpression modules closely related to ulcerative colitis by gene datasets analysis

J Zhu, Z Wang, F Chen, C Liu - PeerJ, 2019 - peerj.com
Background Ulcerative colitis is a type of inflammatory bowel disease posing a great threat
to the public health worldwide. Previously, gene expression studies of mucosal colonic …

Protein-protein interaction analysis for functional characterization of helicases

BL Zybailov, AK Byrd, GV Glazko, Y Rahmatallah… - Methods, 2016 - Elsevier
Helicases are enzymes involved in nucleic acid metabolism, playing major roles in
replication, transcription, and repair. Defining helicases oligomerization state and transient …

Investigation of the gene co-expression network and hub genes associated with acute mountain sickness

Y Chang, J He, J Tang, K Chen, Z Wang, Q **a, H Li - Hereditas, 2020 - Springer
Background Acute mountain sickness has become a heavily researched topic in recent
years. However, the genetic mechanism and effects have not been elucidated. Our goal is to …

Gene-Network-Based Feature Set (GNFS) for expression-based cancer classification

N Doungpan, W Engchuan, A Meechai… - Journal of Medical …, 2016 - ingentaconnect.com
Identification of cancer biomarker using gene expression data is a challenging task. Many
strategies have been proposed to identify signature genes for distinguishing cancer from …