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A comprehensive survey of foundation models in medicine
Foundation models (FMs) are large-scale deeplearning models that are developed using
large datasets and self-supervised learning methods. These models serve as a base for …
large datasets and self-supervised learning methods. These models serve as a base for …
Provable in-context learning of linear systems and linear elliptic pdes with transformers
Foundation models for natural language processing, powered by the transformer
architecture, exhibit remarkable in-context learning (ICL) capabilities, allowing pre-trained …
architecture, exhibit remarkable in-context learning (ICL) capabilities, allowing pre-trained …
Characterizing uncertainty in predictions of genomic sequence-to-activity models
Genomic sequence-to-activity models are increasingly utilized to understand gene
regulatory syntax and probe the functional consequences of regulatory variation. Current …
regulatory syntax and probe the functional consequences of regulatory variation. Current …
Causal Representation Learning from Multimodal Biological Observations
Prevalent in biological applications (eg, human phenotype measurements), multimodal
datasets can provide valuable insights into the underlying biological mechanisms. However …
datasets can provide valuable insights into the underlying biological mechanisms. However …
Bridging biomolecular modalities for knowledge transfer in bio-language models
In biology, messenger RNA (mRNA) plays a crucial role in gene expression and protein
synthesis. Accurate predictive modeling of mRNA properties can greatly enhance our …
synthesis. Accurate predictive modeling of mRNA properties can greatly enhance our …
DNA Language Models for RNA Analyses
S Du, L Liang, J Li, C Kingsford - openreview.net
Genomic Language Models (gLMs), encompassing DNA models, RNA models, and
multimodal models, are becoming widely used for the analysis of biological sequences …
multimodal models, are becoming widely used for the analysis of biological sequences …