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Phagocytosis in cellular defense and nutrition: a food-centered approach to the evolution of macrophages
The uptake of macromolecules and larger energy-rich particles into the cell is known as
phagocytosis. Phagocytosed material is enzymatically degraded in membrane-bound …
phagocytosis. Phagocytosed material is enzymatically degraded in membrane-bound …
Implementing computational modeling in tissue engineering: where disciplines meet
In recent years, the mathematical and computational sciences have developed novel
methodologies and insights that can aid in designing advanced bioreactors, microfluidic …
methodologies and insights that can aid in designing advanced bioreactors, microfluidic …
Reconciling qualitative, abstract, and scalable modeling of biological networks
Predicting biological systems' behaviors requires taking into account many molecular and
genetic elements for which limited information is available past a global knowledge of their …
genetic elements for which limited information is available past a global knowledge of their …
Reprogramming cancer into antigen-presenting cells as a novel immunotherapy
Therapeutic cancer vaccination seeks to elicit activation of tumor-reactive T cells capable of
recognizing tumor-associated antigens (TAA) and eradicating malignant cells. Here, we …
recognizing tumor-associated antigens (TAA) and eradicating malignant cells. Here, we …
The CoLoMoTo interactive notebook: accessible and reproducible computational analyses for qualitative biological networks
Analysing models of biological networks typically relies on workflows in which different
software tools with sensitive parameters are chained together, many times with additional …
software tools with sensitive parameters are chained together, many times with additional …
Models of cell processes are far from the edge of chaos
Complex living systems are thought to exist at the “edge of chaos” separating the ordered
dynamics of robust function from the disordered dynamics of rapid environmental …
dynamics of robust function from the disordered dynamics of rapid environmental …
Logical modeling and analysis of cellular regulatory networks with GINsim 3.0
The logical formalism is well adapted to model large cellular networks, in particular when
detailed kinetic data are scarce. This tutorial focuses on this well-established qualitative …
detailed kinetic data are scarce. This tutorial focuses on this well-established qualitative …
DUX4r, ZNF384r and PAX5-P80R mutated B-cell precursor acute lymphoblastic leukemia frequently undergo monocytic switch
M Novakova, M Zaliova, K Fiser… - …, 2020 - pmc.ncbi.nlm.nih.gov
Recently, we described B-cell precursor acute lymphoblastic leukemia (BCP-ALL) subtype
with an early switch to the monocytic lineage and the loss of the B-cell immunophenotype …
with an early switch to the monocytic lineage and the loss of the B-cell immunophenotype …
A logic-incorporated gene regulatory network deciphers principles in cell fate decisions
G Xue, X Zhang, W Li, L Zhang, Z Zhang, X Zhou… - Elife, 2024 - elifesciences.org
Organisms utilize gene regulatory networks (GRN) to make fate decisions, but the regulatory
mechanisms of transcription factors (TF) in GRNs are exceedingly intricate. A longstanding …
mechanisms of transcription factors (TF) in GRNs are exceedingly intricate. A longstanding …
A novel Boolean network inference strategy to model early hematopoiesis aging
L Hérault, M Poplineau, E Duprez, É Remy - Computational and Structural …, 2023 - Elsevier
Hematopoietic stem cell (HSC) aging is a multifactorial event leading to changes in HSC
properties and functions, which are intrinsically coordinated and affect the early …
properties and functions, which are intrinsically coordinated and affect the early …