Evolution of plant NLRs: from natural history to precise modifications

J Tamborski, KV Krasileva - Annual review of plant biology, 2020 - annualreviews.org
Nucleotide-binding leucine-rich repeat receptors (NLRs) monitor the plant intracellular
environment for signs of pathogen infection. Several mechanisms of NLR-mediated …

Plant NBS-LRR proteins: adaptable guards

L McHale, X Tan, P Koehl, RW Michelmore - Genome biology, 2006 - Springer
The majority of disease resistance genes in plants encode nucleotide-binding site leucine-
rich repeat (NBS-LRR) proteins. This large family is encoded by hundreds of diverse genes …

Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza

JC Stein, Y Yu, D Copetti, DJ Zwickl, L Zhang… - Nature …, 2018 - nature.com
The genus Oryza is a model system for the study of molecular evolution over time scales
ranging from a few thousand to 15 million years. Using 13 reference genomes spanning the …

[HTML][HTML] Epigenomic diversity in a global collection of Arabidopsis thaliana accessions

T Kawakatsu, SC Huang, F Jupe, E Sasaki, RJ Schmitz… - Cell, 2016 - cell.com
The epigenome orchestrates genome accessibility, functionality, and three-dimensional
structure. Because epigenetic variation can impact transcription and thus phenotypes, it may …

NLR network mediates immunity to diverse plant pathogens

CH Wu, A Abd-El-Haliem, TO Bozkurt, K Belhaj… - Proceedings of the …, 2017 - pnas.org
Both plants and animals rely on nucleotide-binding domain and leucine-rich repeat-
containing (NLR) proteins to respond to invading pathogens and activate immune …

The genome of cowpea (Vigna unguiculata [L.] Walp.)

S Lonardi, M Muñoz‐Amatriaín, Q Liang… - The Plant …, 2019 - Wiley Online Library
Summary Cowpea (Vigna unguiculata [L.] Walp.) is a major crop for worldwide food and
nutritional security, especially in sub‐Saharan Africa, that is resilient to hot and drought …

Chromosome-level assemblies of multiple Arabidopsis genomes reveal hotspots of rearrangements with altered evolutionary dynamics

WB Jiao, K Schneeberger - Nature communications, 2020 - nature.com
Despite hundreds of sequenced Arabidopsis genomes, very little is known about the degree
of genomic collinearity within single species, due to the low number of chromosome-level …

New reference genome sequences of hot pepper reveal the massive evolution of plant disease-resistance genes by retroduplication

S Kim, J Park, SI Yeom, YM Kim, E Seo, KT Kim… - Genome biology, 2017 - Springer
Background Transposable elements are major evolutionary forces which can cause new
genome structure and species diversification. The role of transposable elements in the …

[PDF][PDF] Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry

M Colle, CP Leisner, CM Wai, S Ou, KA Bird… - …, 2019 - academic.oup.com
Abstract Background Highbush blueberry (Vaccinium corymbosum) has long been
consumed for its unique flavor and composition of health-promoting phytonutrients …

Using the Acropora digitifera genome to understand coral responses to environmental change

C Shinzato, E Shoguchi, T Kawashima, M Hamada… - Nature, 2011 - nature.com
Despite the enormous ecological and economic importance of coral reefs, the keystone
organisms in their establishment, the scleractinian corals, increasingly face a range of …