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Accelerated Simulations Reveal Physicochemical Factors Governing Stability and Composition of RNA Clusters
Under certain conditions, RNA repeat sequences phase separate, yielding protein-free
biomolecular condensates. Importantly, RNA repeat sequences have also been implicated …
biomolecular condensates. Importantly, RNA repeat sequences have also been implicated …
Odd–even disparity in the population of slipped hairpins in RNA repeat sequences with implications for phase separation
Low-complexity nucleotide repeat sequences, which are implicated in several neurological
disorders, undergo liquid–liquid phase separation (LLPS) provided the number of repeat …
disorders, undergo liquid–liquid phase separation (LLPS) provided the number of repeat …
Energy landscapes of homopolymeric RNAs revealed by deep unsupervised learning
Conformational dynamics of RNA plays important roles in a variety of cellular functions such
as transcriptional regulation, catalysis, scaffolding, and sensing. Recently, RNAs with low …
as transcriptional regulation, catalysis, scaffolding, and sensing. Recently, RNAs with low …
Small CAG Repeat RNA Forms a Duplex Structure with Sticky Ends That Promote RNA Condensation
Biomolecular condensation lays the foundation of forming biologically important
membraneless organelles, but abnormal condensation processes are often associated with …
membraneless organelles, but abnormal condensation processes are often associated with …
[PDF][PDF] Biomolecular Condensates Can Enhance Homotypic RNA Clustering
Intracellular aggregation of repeat expanded RNA has been implicated in many
neurological disorders. Here, we study the role of biomolecular condensates on irreversible …
neurological disorders. Here, we study the role of biomolecular condensates on irreversible …
Understanding the self-assembly and molecular structure of mRNA lipid nanoparticles at real size: Insights from the ultra-large-scale simulation
Messenger RNA (mRNA) encapsulated in lipid nanoparticles (LNPs) represents a cutting-
edge delivery technology that played a pivotal role during the COVID-19 pandemic and in …
edge delivery technology that played a pivotal role during the COVID-19 pandemic and in …
Impact of linker length on biomolecular condensate formation
Biomolecular condensates are membraneless organelles formed via phase separation of
macromolecules, typically consisting of bond-forming “stickers” connected by flexible …
macromolecules, typically consisting of bond-forming “stickers” connected by flexible …
Interplay between self-assembly and phase separation in a polymer-complex model
We present a theoretical model for predicting the phase behavior of polymer solutions in
which phase separation competes with oligomerization. Specifically, we consider scenarios …
which phase separation competes with oligomerization. Specifically, we consider scenarios …
Competition between self-assembly and phase separation governs high-temperature condensation of a DNA liquid
In many biopolymer solutions, attractive interactions that stabilize finite-sized clusters at low
concentrations also promote phase separation at high concentrations. Here we study a …
concentrations also promote phase separation at high concentrations. Here we study a …
Effects of linker length on phase separation: lessons from the Rubisco-EPYC1 system of the algal pyrenoid
T GrandPre, Y Zhang, AGT Pyo, B Weiner, JL Li… - …, 2023 - pmc.ncbi.nlm.nih.gov
Biomolecular condensates are membraneless organelles formed via phase separation of
macromolecules, typically consisting of bond-forming “stickers” connected by flexible …
macromolecules, typically consisting of bond-forming “stickers” connected by flexible …