Speciation in the deep: genomics and morphology reveal a new species of beaked whale Mesoplodon eueu

EL Carroll, MR McGowen… - … of the Royal …, 2021 - royalsocietypublishing.org
The deep sea has been described as the last major ecological frontier, as much of its
biodiversity is yet to be discovered and described. Beaked whales (ziphiids) are among the …

Historic sampling of a vanishing beast: population structure and diversity in the black rhinoceros

F Sánchez-Barreiro, B De Cahsan… - Molecular biology …, 2023 - academic.oup.com
The black rhinoceros (Diceros bicornis L.) is a critically endangered species historically
distributed across sub-Saharan Africa. Hunting and habitat disturbance have diminished …

Genomics reveal population structure, evolutionary history, and signatures of selection in the northern bottlenose whale, Hyperoodon ampullatus

E de Greef, AL Einfeldt, PJO Miller… - Molecular …, 2022 - Wiley Online Library
Abstract Information on wildlife population structure, demographic history, and adaptations
are fundamental to understanding species evolution and informing conservation strategies …

Biogeography in the deep: Hierarchical population genomic structure of two beaked whale species

AB Onoufriou, OE Gaggiotti, NA de Soto… - Global Ecology and …, 2022 - Elsevier
The deep sea is the largest ecosystem on Earth, yet little is known about the processes
driving patterns of genetic diversity in its inhabitants. Here, we investigated the macro-and …

Quantifying the uncertainty of assembly-free genome-wide distance estimates and phylogenetic relationships using subsampling

E Rachtman, S Sarmashghi, V Bafna, S Mirarab - Cell systems, 2022 - cell.com
Computing distance between two genomes without alignments or even access to
assemblies has many downstream analyses. However, alignment-free methods, including in …

Large variance in inbreeding within the Iberian wolf population

I Salado, M Preick, N Lupiáñez-Corpas… - Journal of …, 2023 - academic.oup.com
The gray wolf (Canis lupus) population on the Iberian Peninsula was the largest in western
and central Europe during most of the 20th century, with its size apparently never under a …

Sympatry of genetically distinct Atlantic Puffins (Fratercula arctica) in the High Arctic

DM Leigh, O Kersten, B Star, T Anker‐Nilssen… - Ibis, 2023 - Wiley Online Library
Across its range, the Atlantic Puffin Fratercula arctica is divided into four separate genetic
clusters that correspond with geography and/or size differences. However, in the Western …

Range‐wide phylogeographic structure of the endangered Irrawaddy dolphin (Orcaella brevirostris) using expanded sampling from contemporary and historical …

MR McGowen, S Caballero, MFC Flores… - Marine Mammal …, 2024 - Wiley Online Library
Abstract The Irrawaddy dolphin (Orcaella brevirostris) is an endangered cetacean that
ranges throughout much of Southeast Asia and lives in coastal, estuarine, and riverine …

Genome-wide alignment-free phylogenetic distance estimation under a no strand-bias model

M Balaban, NA Bristy, A Faisal, MS Bayzid… - Bioinformatics …, 2022 - academic.oup.com
While alignment has been the dominant approach for determining homology prior to
phylogenetic inference, alignment-free methods can simplify the analysis, especially when …

Genetic diversity and demographic history of the leopard seal: A Southern Ocean top predator

AN Bender, DJ Krause, ME Goebel, JI Hoffman… - Plos one, 2023 - journals.plos.org
Leopard seals (Hydrurga leptonyx) are top predators that can exert substantial top-down
control of their Antarctic prey species. However, population trends and genetic diversity of …