IMG ER: a system for microbial genome annotation expert review and curation

VM Markowitz, K Mavromatis, NN Ivanova… - …, 2009 - academic.oup.com
Motivation: A rapidly increasing number of microbial genomes are sequenced by
organizations worldwide and are eventually included into various public genome data …

A phylum level perspective on bacterial cell envelope architecture

IC Sutcliffe - Trends in microbiology, 2010 - cell.com
Improved understanding of the bacterial phylogenetic tree has allowed the distinction of at
least 25 phyla with cultured representatives. This review surveys the diversity of cell …

Role of the termite gut microbiota in symbiotic digestion

A Brune, M Ohkuma - Biology of termites: a modern synthesis, 2011 - Springer
The symbiotic gut microbiota of termites plays important roles in lignocellulose digestion and
nitrogen metabolism. Termites possess a dual cellulolytic system: in lower termites the …

Map** the tree of life: progress and prospects

NR Pace - Microbiology and molecular biology reviews, 2009 - journals.asm.org
The intent of this article is to provide a critical assessment of our current understanding of
life's phylogenetic diversity. Phylogenetic comparison of gene sequences is a natural way to …

Parallel metatranscriptome analyses of host and symbiont gene expression in the gut of the termite Reticulitermes flavipes

A Tartar, MM Wheeler, X Zhou, MR Coy… - Biotechnology for …, 2009 - Springer
Background Termite lignocellulose digestion is achieved through a collaboration of host
plus prokaryotic and eukaryotic symbionts. In the present work, we took a combined host …

Origin of diderm (Gram-negative) bacteria: antibiotic selection pressure rather than endosymbiosis likely led to the evolution of bacterial cells with two membranes

RS Gupta - Antonie Van Leeuwenhoek, 2011 - Springer
The prokaryotic organisms can be divided into two main groups depending upon whether
their cell envelopes contain one membrane (monoderms) or two membranes (diderms). It is …

Diversity, structure, and evolution of the termite gut microbial community

M Ohkuma, A Brune - Biology of termites: a modern synthesis, 2011 - Springer
The gut of termites is densely populated with microbial symbionts that aid in the efficient
digestion of recalcitrant lignocellulose. Despite the formidable unculturability of the resident …

Size matters: ultra-small and filterable microorganisms in the environment

R Nakai - Microbes and Environments, 2020 - jstage.jst.go.jp
Ultra-small microorganisms are ubiquitous in Earth's environments. Ultramicrobacteria,
which are defined as having a cell volume of< 0.1 μm 3, are often numerically dominant in …

Groundwater Elusimicrobia are metabolically diverse compared to gut microbiome Elusimicrobia and some have a novel nitrogenase paralog

R Méheust, CJ Castelle, PB Matheus Carnevali… - The ISME …, 2020 - academic.oup.com
Currently described members of Elusimicrobia, a relatively recently defined phylum, are
animal-associated and rely on fermentation. However, free-living Elusimicrobia have been …

Effects of micro-aeration on microbial niches and antimicrobial resistances in blackwater anaerobic digesters

B Guo, N Yu, DG Weissbrodt, Y Liu - Water research, 2021 - Elsevier
Anaerobic digestion (AD) of source-diverted blackwater (toilet flush) at ambient room
temperature presents challenges for fast hydrolysis of particulate matters. This study …