Artificial intelligence for digital and computational pathology

AH Song, G Jaume, DFK Williamson, MY Lu… - Nature Reviews …, 2023 - nature.com
Advances in digitizing tissue slides and the fast-paced progress in artificial intelligence,
including deep learning, have boosted the field of computational pathology. This field holds …

Explainable AI for bioinformatics: methods, tools and applications

MR Karim, T Islam, M Shajalal, O Beyan… - Briefings in …, 2023 - academic.oup.com
Artificial intelligence (AI) systems utilizing deep neural networks and machine learning (ML)
algorithms are widely used for solving critical problems in bioinformatics, biomedical …

Trustworthy graph neural networks: Aspects, methods, and trends

H Zhang, B Wu, X Yuan, S Pan, H Tong… - Proceedings of the …, 2024 - ieeexplore.ieee.org
Graph neural networks (GNNs) have emerged as a series of competent graph learning
methods for diverse real-world scenarios, ranging from daily applications such as …

Gmai-mmbench: A comprehensive multimodal evaluation benchmark towards general medical ai

J Ye, G Wang, Y Li, Z Deng, W Li, T Li… - Advances in …, 2025 - proceedings.neurips.cc
Abstract Large Vision-Language Models (LVLMs) are capable of handling diverse data
types such as imaging, text, and physiological signals, and can be applied in various fields …

[HTML][HTML] Hierarchical graph representations in digital pathology

P Pati, G Jaume, A Foncubierta-Rodriguez… - Medical image …, 2022 - Elsevier
Cancer diagnosis, prognosis, and therapy response predictions from tissue specimens
highly depend on the phenotype and topological distribution of constituting histological …

[HTML][HTML] SlideGraph+: Whole slide image level graphs to predict HER2 status in breast cancer

W Lu, M Toss, M Dawood, E Rakha, N Rajpoot… - Medical Image …, 2022 - Elsevier
Human epidermal growth factor receptor 2 (HER2) is an important prognostic and predictive
factor which is overexpressed in 15–20% of breast cancer (BCa). The determination of its …

Accelerating histopathology workflows with generative AI-based virtually multiplexed tumour profiling

P Pati, S Karkampouna, F Bonollo… - Nature machine …, 2024 - nature.com
Understanding the spatial heterogeneity of tumours and its links to disease initiation and
progression is a cornerstone of cancer biology. Presently, histopathology workflows heavily …

[HTML][HTML] Computational pathology: a survey review and the way forward

MS Hosseini, BE Bejnordi, VQH Trinh, L Chan… - Journal of Pathology …, 2024 - Elsevier
Abstract Computational Pathology (CPath) is an interdisciplinary science that augments
developments of computational approaches to analyze and model medical histopathology …

Trustworthy graph learning: Reliability, explainability, and privacy protection

B Wu, Y Bian, H Zhang, J Li, J Yu, L Chen… - Proceedings of the 28th …, 2022 - dl.acm.org
Deep graph learning (DGL) has achieved remarkable progress in both business and
scientific areas ranging from finance and e-commerce, to drug and advanced material …

Differentiable zooming for multiple instance learning on whole-slide images

K Thandiackal, B Chen, P Pati, G Jaume… - … on Computer Vision, 2022 - Springer
Abstract Multiple Instance Learning (MIL) methods have become increasingly popular for
classifying gigapixel-sized Whole-Slide Images (WSIs) in digital pathology. Most MIL …