Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology
Abstract Quantitative PCR (Q-PCR or real-time PCR) approaches are now widely applied in
microbial ecology to quantify the abundance and expression of taxonomic and functional …
microbial ecology to quantify the abundance and expression of taxonomic and functional …
Bias and artifacts in multitemplate polymerase chain reactions (PCR)
T Kanagawa - Journal of bioscience and bioengineering, 2003 - Elsevier
Polymerase chain reaction (PCR) is often used for the amplification of a mixture of
homologous genes. PCR bias and artifact formation can occur in multitemplate PCR, and …
homologous genes. PCR bias and artifact formation can occur in multitemplate PCR, and …
QMEC: a tool for high-throughput quantitative assessment of microbial functional potential in C, N, P, and S biogeochemical cycling
Microorganisms are major drivers of elemental cycling in the biosphere. Determining the
abundance of microbial functional traits involved in the transformation of nutrients, including …
abundance of microbial functional traits involved in the transformation of nutrients, including …
The diversity and biogeography of soil bacterial communities
For centuries, biologists have studied patterns of plant and animal diversity at continental
scales. Until recently, similar studies were impossible for microorganisms, arguably the most …
scales. Until recently, similar studies were impossible for microorganisms, arguably the most …
Relative roles of niche and neutral processes in structuring a soil microbial community
Most attempts to identify the processes that structure natural communities have focused on
conspicuous macroorganisms whereas the processes responsible for structuring microbial …
conspicuous macroorganisms whereas the processes responsible for structuring microbial …
Evidence for Negative Effects of TiO2 and ZnO Nanoparticles on Soil Bacterial Communities
Increased use of engineered nanoparticles (ENPs) raises concerns about their
environmental impacts, but the effects of metal oxide ENPs on environmental processes and …
environmental impacts, but the effects of metal oxide ENPs on environmental processes and …
Reducing codon redundancy and screening effort of combinatorial protein libraries created by saturation mutagenesis
Saturation mutagenesis probes define sections of the vast protein sequence space.
However, even if randomization is limited this way, the combinatorial numbers problem is …
However, even if randomization is limited this way, the combinatorial numbers problem is …
PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample
SG Acinas, R Sarma-Rupavtarm… - Applied and …, 2005 - journals.asm.org
The contribution of PCR artifacts to 16S rRNA gene sequence diversity from a complex
bacterioplankton sample was estimated. Taq DNA polymerase errors were found to be the …
bacterioplankton sample was estimated. Taq DNA polymerase errors were found to be the …
Urban aerosols harbor diverse and dynamic bacterial populations
Considering the importance of its potential implications for human health, agricultural
productivity, and ecosystem stability, surprisingly little is known regarding the composition or …
productivity, and ecosystem stability, surprisingly little is known regarding the composition or …
Enhanced sensitivity of DNA‐and rRNA‐based stable isotope probing by fractionation and quantitative analysis of isopycnic centrifugation gradients
Stable isotope probing (SIP) of nucleic acids allows the detection and identification of active
members of natural microbial populations that are involved in the assimilation of an …
members of natural microbial populations that are involved in the assimilation of an …