Kinetics for Drug Discovery: an industry-driven effort to target drug residence time

DA Schuetz, WEA de Witte, YC Wong… - Drug discovery today, 2017 - Elsevier
Highlights•A public–private partnership targets drug-binding kinetics in a multilevel
approach.•New experimental approaches for measuring drug residence time are …

Kinetic studies of protein–protein interactions

G Schreiber - Current opinion in structural biology, 2002 - Elsevier
The structure of a protein–protein interaction, its affinity and thermodynamic characteristics
depict a 'frozen'state of a complex. This picture ignores the kinetic nature of complex …

Isothermal titration calorimetry of protein–protein interactions

MM Pierce, CS Raman, BT Nall - Methods, 1999 - Elsevier
The interaction of biologicalmacromolecules, whether protein–DNA, antibody–antigen,
hormone–receptor, etc., illustrates the complexity and diversity of molecular recognition. The …

Kinetic and affinity limits on antibodies produced during immune responses.

J Foote, HN Eisen - Proceedings of the National Academy of Sciences, 1995 - pnas.org
In this issue of the Proceedings, Roost et al.(1) describe the development of humoral
immunity in mice infected with vesicular stomatitis virus (VSV). The authors sac-rificed mice …

Kinetic advantage of intrinsically disordered proteins in coupled folding–binding process: a critical assessment of the “fly-casting” mechanism

Y Huang, Z Liu - Journal of molecular biology, 2009 - Elsevier
Intrinsically disordered proteins (IDPs) are recognized to play important roles in many
biological functions such as transcription and translation regulation, cellular signal …

Molecular recognition by induced fit: how fit is the concept?

HR Bosshard - Physiology, 2001 - journals.physiology.org
Induced fit explains why biomolecules can bind together even if they are not optimized for
binding. However, induced fit can lead to a kinetic bottleneck and does not describe every …

Protein-protein association: investigation of factors influencing association rates by Brownian dynamics simulations

RR Gabdoulline, RC Wade - Journal of molecular biology, 2001 - Elsevier
The rate of protein-protein association limits the response time due to protein-protein
interactions. The bimolecular association rate may be diffusion-controlled or influenced, and …

Parallel SPR and QCM-D quantitative analysis of CD9, CD63, and CD81 tetraspanins: a simple and sensitive way to determine the concentration of extracellular …

A Kowalczyk, A Gajda-Walczak… - Analytical …, 2023 - ACS Publications
Tetraspanins, including CD9, CD63, and CD81, are transmembrane biomarkers that play a
crucial role in regulating cancer cell proliferation, invasion, and metastasis, as well as …

Role of Divalency in the High-Affinity Binding of Anticardiolipin Antibody−β2-Glycoprotein I Complexes to Lipid Membranes

GM Willems, MP Janssen, MMAL Pelsers… - Biochemistry, 1996 - ACS Publications
β2-Glycoprotein I (β2GPI) is an essential cofactor for the binding to lipids of anticardiolipin
antibodies (ACA), isolated from patients with anti-phospholipid syndrome. We used …

Binding mechanism of an SH3 domain studied by NMR and ITC

JP Demers, A Mittermaier - Journal of the American Chemical …, 2009 - ACS Publications
Complexes between Src-homology 3 domains and proline-rich target peptides can have
lifetimes on the order of milliseconds, making them too short-lived for kinetic characterization …