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[HTML][HTML] Toward a global virus genomic surveillance network
The COVID-19 pandemic galvanized the field of virus genomic surveillance, demonstrating
its utility for public health. Now, we must harness the momentum that led to increased …
its utility for public health. Now, we must harness the momentum that led to increased …
Progress and challenges in virus genomic epidemiology
Genomic epidemiology, which links pathogen genomes with associated metadata to
understand disease transmission, has become a key component of outbreak response …
understand disease transmission, has become a key component of outbreak response …
The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance
Investment in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) sequencing
in Africa over the past year has led to a major increase in the number of sequences that …
in Africa over the past year has led to a major increase in the number of sequences that …
Optimization of the SARS-CoV-2 ARTIC network V4 primers and whole genome sequencing protocol
Introduction The ARTIC Network's primer set and amplicon-based protocol is one of the most
widely used SARS-CoV-2 sequencing protocol. An update to the V3 primer set was released …
widely used SARS-CoV-2 sequencing protocol. An update to the V3 primer set was released …
Emergence and spread of a SARS-CoV-2 lineage A variant (A. 23.1) with altered spike protein in Uganda
DL Bugembe, MVT Phan, I Ssewanyana… - Nature …, 2021 - nature.com
Here, we report SARS-CoV-2 genomic surveillance from March 2020 until January 2021 in
Uganda, a landlocked East African country with a population of approximately 40 million …
Uganda, a landlocked East African country with a population of approximately 40 million …
Epidemiological impact and cost-effectiveness analysis of COVID-19 vaccination in Kenya
S Orangi, J Ojal, SPC Brand, C Orlendo, A Kairu… - BMJ Global …, 2022 - gh.bmj.com
Background A few studies have assessed the epidemiological impact and the cost-
effectiveness of COVID-19 vaccines in settings where most of the population had been …
effectiveness of COVID-19 vaccines in settings where most of the population had been …
The current state of nanopore sequencing
J Pugh - Nanopore sequencing: methods and protocols, 2023 - Springer
Nanopore sensing is a disruptive, revolutionary way in which to sequence nucleic acids,
including both native DNA and RNA molecules. First commercialized with the MinIONTM …
including both native DNA and RNA molecules. First commercialized with the MinIONTM …
Genomic surveillance of SARS-CoV-2 tracks early interstate transmission of P. 1 lineage and diversification within P. 2 clade in Brazil
The sharp increase of COVID-19 cases in late 2020 has made Brazil the new epicenter of
the ongoing SARS-CoV-2 pandemic. The novel viral lineages P. 1 (Variant of Concern …
the ongoing SARS-CoV-2 pandemic. The novel viral lineages P. 1 (Variant of Concern …
Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package
Abstract Background The Public Health Alliance for Genomic Epidemiology
(PHA4GE)(https://pha4ge. org) is a global coalition that is actively working to establish …
(PHA4GE)(https://pha4ge. org) is a global coalition that is actively working to establish …
A SARS-CoV-2 lineage A variant (A. 23.1) with altered spike has emerged and is dominating the current Uganda epidemic
DL Bugembe, M VT Phan, I Ssewanyana, P Semanda… - MedRxiv, 2021 - medrxiv.org
Introductory paragraph SARS-CoV-2 genomic surveillance in Uganda provides an
opportunity to provide a focused description of the virus evolution in a small landlocked East …
opportunity to provide a focused description of the virus evolution in a small landlocked East …