Fishing for fish environmental DNA: Ecological applications, methodological considerations, surveying designs, and ways forward

M Yao, S Zhang, Q Lu, X Chen, SY Zhang… - Molecular …, 2022 - Wiley Online Library
Vast global declines of freshwater and marine fish diversity and population abundance pose
serious threats to both ecosystem sustainability and human livelihoods. Environmental DNA …

[HTML][HTML] Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods

J Pawlowski, K Bruce, K Panksep, FI Aguirre… - Science of the Total …, 2022 - Elsevier
Environmental DNA (eDNA) metabarcoding (parallel sequencing of DNA/RNA for
identification of whole communities within a targeted group) is revolutionizing the field of …

[CARTE][B] A practical guide to DNA-based methods for biodiversity assessment.

K Bruce, RC Blackman, SJ Bourlat, M Hellström… - 2021 - repository.oceanbestpractices.org
This book represents a synthesis of knowledge and best practice in the field of DNA-based
biomonitoring at the time of writing. It has been written with end-users of molecular tools in …

Lake sedimentary DNA research on past terrestrial and aquatic biodiversity: Overview and recommendations

E Capo, C Giguet-Covex, A Rouillard, K Nota… - Quaternary, 2021 - mdpi.com
The use of lake sedimentary DNA to track the long-term changes in both terrestrial and
aquatic biota is a rapidly advancing field in paleoecological research. Although largely …

A validation scale to determine the readiness of environmental DNA assays for routine species monitoring

B Thalinger, K Deiner, LR Harper, HC Rees… - Environmental …, 2021 - Wiley Online Library
The use of environmental DNA (eDNA) analysis for species monitoring requires rigorous
validation—from field sampling to the analysis of PCR‐based results—for meaningful …

Methodology of fish eDNA and its applications in ecology and environment

S Wang, Z Yan, B Hänfling, X Zheng, P Wang… - Science of the Total …, 2021 - Elsevier
Fish environmental DNA (eDNA) studies have made substantial progress during the past
decade, and significant advances in monitoring fishes have been gained by taking …

Can we manage fisheries with the inherent uncertainty from eDNA?

CL Jerde - Journal of fish biology, 2021 - Wiley Online Library
Environmental (e) DNA, as a general approach in aquatic systems, seeks to connect the
presence of species' genetic material in the water and hence to infer the species' physical …

Biodiversity assessment across a dynamic riverine system: A comparison of eDNA metabarcoding versus traditional fish surveying methods

J Hallam, EL Clare, JI Jones, JJ Day - Environmental DNA, 2021 - Wiley Online Library
While many studies have considered the ability of eDNA to assess animal communities in
lacustrine settings, fewer have considered riverine systems, particularly those spanning the …

Space-time dynamics in monitoring neotropical fish communities using eDNA metabarcoding

NG Sales, OS Wangensteen, DC Carvalho… - Science of the Total …, 2021 - Elsevier
The biodiverse Neotropical ecoregion remains insufficiently assessed, poorly managed, and
threatened by unregulated human activities. Novel, rapid and cost-effective DNA-based …

Calibrating environmental DNA metabarcoding to conventional surveys for measuring fish species richness

ME McElroy, TL Dressler, GC Titcomb… - Frontiers in Ecology …, 2020 - frontiersin.org
The ability to properly identify species present in a landscape is foundational to ecology and
essential for natural resource management and conservation. However, many species are …