Gene map** in the wild with SNPs: guidelines and future directions

J Slate, J Gratten, D Beraldi, J Stapley, M Hale… - Genetica, 2009 - Springer
One of the biggest challenges facing evolutionary biologists is to identify and understand
loci that explain fitness variation in natural populations. This review describes how genetic …

Genetic features of reproductive traits in bovine and buffalo: Lessons from bovine to buffalo

B Shao, H Sun, MJ Ahmad, N Ghanem… - Frontiers in …, 2021 - frontiersin.org
Bovine and buffalo are important livestock species that have contributed to human lives for
more than 1000 years. Improving fertility is very important to reduce the cost of production. In …

Runs of homozygosity and population history in cattle

DC Purfield, DP Berry, S McParland, DG Bradley - BMC genetics, 2012 - Springer
Background Runs of homozygosity (ROH) are contiguous lengths of homozygous genotypes
that are present in an individual due to parents transmitting identical haplotypes to their …

Development and characterization of a high density SNP genoty** assay for cattle

LK Matukumalli, CT Lawley, RD Schnabel, JF Taylor… - PloS one, 2009 - journals.plos.org
The success of genome-wide association (GWA) studies for the detection of sequence
variation affecting complex traits in human has spurred interest in the use of large-scale high …

Linkage disequilibrium and persistence of phase in Holstein–Friesian, Jersey and Angus cattle

APW De Roos, BJ Hayes, RJ Spelman, ME Goddard - Genetics, 2008 - academic.oup.com
When a genetic marker and a quantitative trait locus (QTL) are in linkage disequilibrium (LD)
in one population, they may not be in LD in another population or their LD phase may be …

A genome wide survey of SNP variation reveals the genetic structure of sheep breeds

JW Kijas, D Townley, BP Dalrymple, MP Heaton… - PloS one, 2009 - journals.plos.org
The genetic structure of sheep reflects their domestication and subsequent formation into
discrete breeds. Understanding genetic structure is essential for achieving genetic …

Reliability of genomic predictions across multiple populations

APW De Roos, BJ Hayes, ME Goddard - Genetics, 2009 - academic.oup.com
Genomic prediction of future phenotypes or genetic merit using dense SNP genotypes can
be used for prediction of disease risk, forensics, and genomic selection of livestock and …

Genomic selection using low-density marker panels

D Habier, RL Fernando, JCM Dekkers - Genetics, 2009 - academic.oup.com
Genomic selection (GS) using high-density single-nucleotide polymorphisms (SNPs) is
promising to improve response to selection in populations that are under artificial selection …

Accuracies of genomic breeding values in American Angus beef cattle using K-means clustering for cross-validation

M Saatchi, MC McClure, SD McKay, MM Rolf… - Genetics Selection …, 2011 - Springer
Background Genomic selection is a recently developed technology that is beginning to
revolutionize animal breeding. The objective of this study was to estimate marker effects to …

GWAS and fine-map** of livability and six disease traits in Holstein cattle

E Freebern, DJA Santos, L Fang, J Jiang… - BMC genomics, 2020 - Springer
Background Health traits are of significant economic importance to the dairy industry due to
their effects on milk production and associated treatment costs. Genome-wide association …