Transformer models in biomedicine

S Madan, M Lentzen, J Brandt, D Rueckert… - BMC Medical Informatics …, 2024 - Springer
Deep neural networks (DNN) have fundamentally revolutionized the artificial intelligence
(AI) field. The transformer model is a type of DNN that was originally used for the natural …

Machine learning models to detect and predict patient safety events using electronic health records: a systematic review

G Deimazar, A Sheikhtaheri - International Journal of Medical Informatics, 2023 - Elsevier
Introduction Identifying patient safety events using electronic health records (EHRs) and
automated machine learning-based detection methods can help improve the efficiency and …

Relation extraction using large language models: a case study on acupuncture point locations

Y Li, X Peng, J Li, X Zuo, S Peng, D Pei… - Journal of the …, 2024 - academic.oup.com
Objective In acupuncture therapy, the accurate location of acupoints is essential for its
effectiveness. The advanced language understanding capabilities of large language models …

Descriptive prediction of drug side‐effects using a hybrid deep learning model

CY Lee, YPP Chen - International Journal of Intelligent Systems, 2021 - Wiley Online Library
In this study, we developed a hybrid deep learning (DL) model, which is one of the first
interpretable hybrid DL models with Inception modules, to give a descriptive prediction of …

[HTML][HTML] Extracting biomedical relation from cross-sentence text using syntactic dependency graph attention network

X Zhou, Q Fu, J Chen, L Liu, Y Wang, Y Lu… - Journal of Biomedical …, 2023 - Elsevier
In biomedical literature, cross-sentence texts can usually express rich knowledge, and
extracting the interaction relation between entities from cross-sentence texts is of great …

Historical profile will tell? A deep learning-based multi-level embedding framework for adverse drug event detection and extraction

L **a - Decision Support Systems, 2022 - Elsevier
Analyzing adverse drug events (ADEs) is an integral part of drug safety monitoring, which
plays a significant role in medication decision-making. The increasing prevalence of health …

The interactive fusion of characters and lexical information for Chinese named entity recognition

Y Wang, Z Wang, H Yu, G Wang, D Lei - Artificial Intelligence Review, 2024 - Springer
Many studies have demonstrated that incorporating lexical information into characters can
effectively improve the performance of Chinese Named Entity Recognition (CNER) …

Improving drug safety with adverse event detection using natural language processing

T Botsis, K Kreimeyer - Expert Opinion on Drug Safety, 2023 - Taylor & Francis
Introduction Pharmacovigilance (PV) involves monitoring and aggregating adverse event
information from a variety of data sources, including health records, biomedical literature …

Extracting adverse drug events from clinical Notes: A systematic review of approaches used

S Modi, KA Kasmiran, NM Sharef… - Journal of Biomedical …, 2024 - Elsevier
Background An adverse drug event (ADE) is any unfavorable effect that occurs due to the
use of a drug. Extracting ADEs from unstructured clinical notes is essential to biomedical text …

Integrating deep learning architectures for enhanced biomedical relation extraction: a pipeline approach

MJ Sarol, G Hong, E Guerra, H Kilicoglu - Database, 2024 - academic.oup.com
Biomedical relation extraction from scientific publications is a key task in biomedical natural
language processing (NLP) and can facilitate the creation of large knowledge bases, enable …