A practical guide to amplicon and metagenomic analysis of microbiome data
Advances in high-throughput sequencing (HTS) have fostered rapid developments in the
field of microbiome research, and massive microbiome datasets are now being generated …
field of microbiome research, and massive microbiome datasets are now being generated …
Function and functional redundancy in microbial systems
Microbial communities often exhibit incredible taxonomic diversity, raising questions
regarding the mechanisms enabling species coexistence and the role of this diversity in …
regarding the mechanisms enabling species coexistence and the role of this diversity in …
ImageGP: An easy‐to‐use data visualization web server for scientific researchers
Data visualization plays a crucial role in illustrating results and sharing knowledge among
researchers. Though many types of visualization tools are widely used, most of them require …
researchers. Though many types of visualization tools are widely used, most of them require …
microeco: an R package for data mining in microbial community ecology
C Liu, Y Cui, X Li, M Yao - FEMS microbiology ecology, 2021 - academic.oup.com
ABSTRACT A large amount of sequencing data is produced in microbial community ecology
studies using the high-throughput sequencing technique, especially amplicon-sequencing …
studies using the high-throughput sequencing technique, especially amplicon-sequencing …
Erosion reduces soil microbial diversity, network complexity and multifunctionality
While soil erosion drives land degradation, the impact of erosion on soil microbial
communities and multiple soil functions remains unclear. This hinders our ability to assess …
communities and multiple soil functions remains unclear. This hinders our ability to assess …
Patterns in soil microbial diversity across Europe
Factors driving microbial community composition and diversity are well established but the
relationship with microbial functioning is poorly understood, especially at large scales. We …
relationship with microbial functioning is poorly understood, especially at large scales. We …
DRAM for distilling microbial metabolism to automate the curation of microbiome function
Microbial and viral communities transform the chemistry of Earth's ecosystems, yet the
specific reactions catalyzed by these biological engines are hard to decode due to the …
specific reactions catalyzed by these biological engines are hard to decode due to the …
Host selection shapes crop microbiome assembly and network complexity
Plant microbiomes are essential to host health and productivity but the ecological processes
that govern crop microbiome assembly are not fully known. Here we examined bacterial …
that govern crop microbiome assembly are not fully known. Here we examined bacterial …
Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity
Despite advances in sequencing, lack of standardization makes comparisons across studies
challenging and hampers insights into the structure and function of microbial communities …
challenging and hampers insights into the structure and function of microbial communities …
The ecology of the plastisphere: microbial composition, function, assembly, and network in the freshwater and seawater ecosystems
Microplastics provide a unique habitat for microorganisms, forming the plastisphere. Yet the
ecology of the plastisphere, including the microbial composition, functions, assembly …
ecology of the plastisphere, including the microbial composition, functions, assembly …