From molecules to populations: appreciating and estimating recombination rate variation
Recombination is a central biological process with implications for many areas in the life
sciences. Yet we are only beginning to appreciate variation in the recombination rate along …
sciences. Yet we are only beginning to appreciate variation in the recombination rate along …
Research advances in the genomics and applications for molecular breeding of aquaculture animals
X You, X Shan, Q Shi - Aquaculture, 2020 - Elsevier
High-throughput sequencing technologies have been extensively applied to genetics and
breeding in the aquaculture industry. To date, many aquaculture animal genomes have …
breeding in the aquaculture industry. To date, many aquaculture animal genomes have …
The Atlantic salmon genome provides insights into rediploidization
The whole-genome duplication 80 million years ago of the common ancestor of salmonids
(salmonid-specific fourth vertebrate whole-genome duplication, Ss4R) provides unique …
(salmonid-specific fourth vertebrate whole-genome duplication, Ss4R) provides unique …
Lep-MAP3: robust linkage map** even for low-coverage whole genome sequencing data
P Rastas - Bioinformatics, 2017 - academic.oup.com
Motivation Accurate and dense linkage maps are useful in family-based linkage and
association studies, quantitative trait locus map**, analysis of genome synteny and other …
association studies, quantitative trait locus map**, analysis of genome synteny and other …
Sex-dependent dominance maintains migration supergene in rainbow trout
Males and females often differ in their fitness optima for shared traits that have a shared
genetic basis, leading to sexual conflict. Morphologically differentiated sex chromosomes …
genetic basis, leading to sexual conflict. Morphologically differentiated sex chromosomes …
R package ASMap: efficient genetic linkage map construction and diagnosis
J Taylor, D Butler - arxiv preprint arxiv:1705.06916, 2017 - arxiv.org
Although various forms of linkage map construction software are widely available, there is a
distinct lack of packages for use in the R statistical computing environment. This article …
distinct lack of packages for use in the R statistical computing environment. This article …
Construction and analysis of high-density linkage map using high-throughput sequencing data
D Liu, C Ma, W Hong, L Huang, M Liu, H Liu, H Zeng… - Plos one, 2014 - journals.plos.org
Linkage maps enable the study of important biological questions. The construction of high-
density linkage maps appears more feasible since the advent of next-generation …
density linkage maps appears more feasible since the advent of next-generation …
Complex modular architecture around a simple toolkit of wing pattern genes
Identifying the genomic changes that control morphological variation and understanding
how they generate diversity is a major goal of evolutionary biology. In Heliconius butterflies …
how they generate diversity is a major goal of evolutionary biology. In Heliconius butterflies …
The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera
Previous studies have reported that chromosome synteny in Lepidoptera has been well
conserved, yet the number of haploid chromosomes varies widely from 5 to 223. Here we …
conserved, yet the number of haploid chromosomes varies widely from 5 to 223. Here we …
Using linkage maps to correct and scaffold de novo genome assemblies: methods, challenges, and computational tools
JL Fierst - Frontiers in genetics, 2015 - frontiersin.org
Modern high-throughput DNA sequencing has made it possible to inexpensively produce
genome sequences, but in practice many of these draft genomes are fragmented and …
genome sequences, but in practice many of these draft genomes are fragmented and …