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Quality assessment of gene repertoire annotations with OMArk
In the era of biodiversity genomics, it is crucial to ensure that annotations of protein-coding
gene repertoires are accurate. State-of-the-art tools to assess genome annotations measure …
gene repertoires are accurate. State-of-the-art tools to assess genome annotations measure …
OrthoDB and BUSCO update: annotation of orthologs with wider sampling of genomes
Abstract OrthoDB (https://www. orthodb. org) offers evolutionary and functional annotations
of orthologous genes in the widest sampling of eukaryotes, prokaryotes, and viruses …
of orthologous genes in the widest sampling of eukaryotes, prokaryotes, and viruses …
DAVID Ortholog: an integrative tool to enhance functional analysis through orthologs
Abstract Motivation The Database for Annotation, Visualization, and Integrated Discovery
(DAVID) is a web-based bioinformatics system for the functional interpretation of large lists of …
(DAVID) is a web-based bioinformatics system for the functional interpretation of large lists of …
[HTML][HTML] Fumarate reductase drives methane emissions in the genus Oryza through differential regulation of the rhizospheric ecosystem
The emergence of waterlogged Oryza species∼ 15Mya (million years ago) supplied an
anoxic warm bed for methane-producing microorganisms, and methane emissions have …
anoxic warm bed for methane-producing microorganisms, and methane emissions have …
Complete organelle genomes of Korean fir, Abies koreana and phylogenomics of the gymnosperm genus Abies using nuclear and cytoplasmic DNA sequence data
Abies koreana EH Wilson is an endangered evergreen coniferous tree that is native to high
altitudes in South Korea and susceptible to the effects of climate change. Hybridization and …
altitudes in South Korea and susceptible to the effects of climate change. Hybridization and …
Dog10K: an integrated Dog10K database summarizing canine multi-omics
The diversity observed in canine breed phenotypes, together with their risk for heritabily
disorders of relevance to dogs and humans, makes the species an ideal subject for studies …
disorders of relevance to dogs and humans, makes the species an ideal subject for studies …
Studying Target–Engagement of Anti-Infectives by Solvent-Induced Protein Precipitation and Quantitative Mass Spectrometry
L Bizzarri, D Steinbrunn, T Quennesson… - ACS Infectious …, 2024 - ACS Publications
Antimicrobial resistance (AMR) poses a serious threat to global health. The rapid
emergence of resistance contrasts with the slow pace of antimicrobial development …
emergence of resistance contrasts with the slow pace of antimicrobial development …
[HTML][HTML] Unlocking biological insights from differentially expressed Genes: Concepts, methods, and future perspectives
Background Identifying differentially expressed genes (DEGs) is a core task of transcriptome
analysis, as DEGs can reveal the molecular mechanisms underlying biological processes …
analysis, as DEGs can reveal the molecular mechanisms underlying biological processes …
Orthology inference at scale with FastOMA
The surge in genome data, with ongoing efforts aiming to sequence 1.5 M eukaryotes in a
decade, could revolutionize genomics, revealing the origins, evolution and genetic …
decade, could revolutionize genomics, revealing the origins, evolution and genetic …
Repeated shifts in sociality are associated with fine-tuning of highly conserved and lineage-specific enhancers in a socially flexible bee
Comparative genomic studies of social insects suggest that changes in gene regulation are
associated with evolutionary transitions in social behavior, but the activity of predicted …
associated with evolutionary transitions in social behavior, but the activity of predicted …