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Applications of single-cell RNA sequencing in drug discovery and development
B Van de Sande, JS Lee, E Mutasa-Gottgens… - Nature Reviews Drug …, 2023 - nature.com
Single-cell technologies, particularly single-cell RNA sequencing (scRNA-seq) methods,
together with associated computational tools and the growing availability of public data …
together with associated computational tools and the growing availability of public data …
Spatial biology of cancer evolution
Z Seferbekova, A Lomakin, LR Yates… - Nature Reviews …, 2023 - nature.com
The natural history of cancers can be understood through the lens of evolution given that the
driving forces of cancer development are mutation and selection of fitter clones. Cancer …
driving forces of cancer development are mutation and selection of fitter clones. Cancer …
[HTML][HTML] Lineage tracing reveals the phylodynamics, plasticity, and paths of tumor evolution
Tumor evolution is driven by the progressive acquisition of genetic and epigenetic
alterations that enable uncontrolled growth and expansion to neighboring and distal tissues …
alterations that enable uncontrolled growth and expansion to neighboring and distal tissues …
[HTML][HTML] Triple negative breast cancer (TNBC): Non-genetic tumor heterogeneity and immune microenvironment: Emerging treatment options
Triple-negative breast cancer (TNBC) is an aggressive subtype characterized by extensive
intra-tumoral heterogeneity, and frequently develops resistance to therapies. Tumor …
intra-tumoral heterogeneity, and frequently develops resistance to therapies. Tumor …
[HTML][HTML] Single-cell genomic variation induced by mutational processes in cancer
How cell-to-cell copy number alterations that underpin genomic instability in human cancers
drive genomic and phenotypic variation, and consequently the evolution of cancer, remains …
drive genomic and phenotypic variation, and consequently the evolution of cancer, remains …
Haplotype-aware analysis of somatic copy number variations from single-cell transcriptomes
Genome instability and aberrant alterations of transcriptional programs both play important
roles in cancer. Single-cell RNA sequencing (scRNA-seq) has the potential to investigate …
roles in cancer. Single-cell RNA sequencing (scRNA-seq) has the potential to investigate …
Towards precision oncology with patient-derived xenografts
ER Zanella, E Grassi, L Trusolino - Nature reviews Clinical oncology, 2022 - nature.com
Under the selective pressure of therapy, tumours dynamically evolve multiple adaptive
mechanisms that make static interrogation of genomic alterations insufficient to guide …
mechanisms that make static interrogation of genomic alterations insufficient to guide …
Cancer aneuploidies are shaped primarily by effects on tumour fitness
J Shih, S Sarmashghi, N Zhakula-Kostadinova… - Nature, 2023 - nature.com
Aneuploidies—whole-chromosome or whole-arm imbalances—are the most prevalent
alteration in cancer genomes,. However, it is still debated whether their prevalence is due to …
alteration in cancer genomes,. However, it is still debated whether their prevalence is due to …
Single-cell mtDNA dynamics in tumors is driven by coregulation of nuclear and mitochondrial genomes
The extent of cell-to-cell variation in tumor mitochondrial DNA (mtDNA) copy number and
genotype, and the phenotypic and evolutionary consequences of such variation, are poorly …
genotype, and the phenotypic and evolutionary consequences of such variation, are poorly …
Aneuploidy and complex genomic rearrangements in cancer evolution
Mutational processes that alter large genomic regions occur frequently in develo**
tumors. They range from simple copy number gains and losses to the shattering and …
tumors. They range from simple copy number gains and losses to the shattering and …