Proteomic analysis of post-translational modifications
Post-translational modifications modulate the activity of most eukaryote proteins. Analysis of
these modifications presents formidable challenges but their determination generates …
these modifications presents formidable challenges but their determination generates …
Quantitative mass spectrometry in proteomics: a critical review
The quantification of differences between two or more physiological states of a biological
system is among the most important but also most challenging technical tasks in proteomics …
system is among the most important but also most challenging technical tasks in proteomics …
Prediction of peptide mass spectral libraries with machine learning
J Cox - Nature Biotechnology, 2023 - nature.com
The recent development of machine learning methods to identify peptides in complex mass
spectrometric data constitutes a major breakthrough in proteomics. Longstanding methods …
spectrometric data constitutes a major breakthrough in proteomics. Longstanding methods …
Mechanisms of Antibacterial Activity of MgO: Non‐ROS Mediated Toxicity of MgO Nanoparticles Towards Escherichia coli
The toxicity of metal oxide nanomaterials and their antimicrobial activity is attracting
increasing attention. Among these materials, MgO is particularly interesting as a low cost …
increasing attention. Among these materials, MgO is particularly interesting as a low cost …
Modification-specific proteomics: characterization of post-translational modifications by mass spectrometry
ON Jensen - Current opinion in chemical biology, 2004 - Elsevier
Post-translational modifications generate tremendous diversity, complexity and
heterogeneity of gene products, and their determination is one of the main challenges in …
heterogeneity of gene products, and their determination is one of the main challenges in …
Label-free quantification in ion mobility–enhanced data-independent acquisition proteomics
Unbiased data-independent acquisition (DIA) strategies have gained increased popularity in
the field of quantitative proteomics. The integration of ion mobility separation (IMS) into DIA …
the field of quantitative proteomics. The integration of ion mobility separation (IMS) into DIA …
Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures
GZ Li, JPC Vissers, JC Silva, D Golick… - …, 2009 - Wiley Online Library
A novel database search algorithm is presented for the qualitative identification of proteins
over a wide dynamic range, both in simple and complex biological samples. The algorithm …
over a wide dynamic range, both in simple and complex biological samples. The algorithm …
Highly selective enrichment of phosphorylated peptides using titanium dioxide
TE Thingholm, TJD Jørgensen, ON Jensen… - Nature protocols, 2006 - nature.com
The characterization of phosphorylated proteins is a challenging analytical task since many
of the proteins targeted for phosphorylation are low in abundance and phosphorylation is …
of the proteins targeted for phosphorylation are low in abundance and phosphorylation is …
The detection, correlation, and comparison of peptide precursor and product ions from data independent LC‐MS with data dependant LC‐MS/MS
SJ Geromanos, JPC Vissers, JC Silva… - …, 2009 - Wiley Online Library
The detection, correlation, and comparison of peptide and product ions from a data
independent LC‐MS acquisition strategy with data dependent LC‐MS/MS is described. The …
independent LC‐MS acquisition strategy with data dependent LC‐MS/MS is described. The …
UPLC/MSE; a new approach for generating molecular fragment information for biomarker structure elucidation
A new approach to obtain fragmentation information in liquid chromatography/mass
spectrometry (LC/MS) studies of small molecules in complex mixtures is presented using …
spectrometry (LC/MS) studies of small molecules in complex mixtures is presented using …