Integrated analysis of transcriptomic and proteomic data

S Haider, R Pal - Current genomics, 2013 - ingentaconnect.com
Until recently, understanding the regulatory behavior of cells has been pursued through
independent analysis of the transcriptome or the proteome. Based on the central dogma, it …

Elucidating bacterial gene functions in the plant microbiome

A Levy, JM Conway, JL Dangl, T Woyke - Cell host & microbe, 2018 - cell.com
There is a growing appreciation for the important roles microorganisms play in association
with plants. Microorganisms are drawn to distinct plant surfaces by the nutrient-rich …

Control of nitrogen fixation in bacteria that associate with cereals

MH Ryu, J Zhang, T Toth, D Khokhani, BA Geddes… - Nature …, 2020 - nature.com
Legumes obtain nitrogen from air through rhizobia residing in root nodules. Some species of
rhizobia can colonize cereals but do not fix nitrogen on them. Disabling native regulation …

Deciphering the omics of plant-microbe interaction: Perspectives and new insights

M Sharma, S Sudheer, Z Usmani, R Rani… - Current …, 2020 - ingentaconnect.com
Introduction: Plants do not grow in isolation, rather they are hosts to a variety of microbes in
their natural environments. While, few thrive in the plants for their own benefit, others may …

Integrating transcriptome and proteome profiling: Strategies and applications

D Kumar, G Bansal, A Narang, T Basak, T Abbas… - …, 2016 - Wiley Online Library
Discovering the gene expression signature associated with a cellular state is one of the
basic quests in majority of biological studies. For most of the clinical and cellular …

The progress of multi-omics technologies: determining function in lactic acid bacteria using a systems level approach

ST O'Donnell, RP Ross, C Stanton - Frontiers in microbiology, 2020 - frontiersin.org
Lactic Acid Bacteria (LAB) have long been recognized as having a significant impact
ranging from commercial to health domains. A vast amount of research has been carried out …

Unraveling plant–microbe interactions: can multi-species transcriptomics help?

PM Schenk, LC Carvalhais, K Kazan - Trends in biotechnology, 2012 - cell.com
Plants in their natural habitats are surrounded by a large number of microorganisms. Some
microbes directly interact with plants in a mutually beneficial manner whereas others …

Multidisciplinary approaches for studying rhizobium–legume symbioses

GC Dicenzo, M Zamani, A Checcucci… - Canadian Journal of …, 2019 - cdnsciencepub.com
The rhizobium–legume symbiosis is a major source of fixed nitrogen (ammonia) in the
biosphere. The potential for this process to increase agricultural yield while reducing the …

Two MicroRNAs Linked to Nodule Infection and Nitrogen-Fixing Ability in the Legume Lotus japonicus

A De Luis, K Markmann, V Cognat, DB Holt… - Plant …, 2012 - academic.oup.com
Legumes overcome nitrogen shortage by develo** root nodules in which symbiotic
bacteria fix atmospheric nitrogen in exchange for host-derived carbohydrates and mineral …

A genome‐scale metabolic reconstruction of soybean and Bradyrhizobium diazoefficiens reveals the cost–benefit of nitrogen fixation

BL Holland, ML Matthews, P Bota… - New …, 2023 - Wiley Online Library
Nitrogen‐fixing symbioses allow legumes to thrive in nitrogen‐poor soils at the cost of
diverting some photoassimilate to their microsymbionts. Effort is being made to bioengineer …