Integrated analysis of transcriptomic and proteomic data
Until recently, understanding the regulatory behavior of cells has been pursued through
independent analysis of the transcriptome or the proteome. Based on the central dogma, it …
independent analysis of the transcriptome or the proteome. Based on the central dogma, it …
Elucidating bacterial gene functions in the plant microbiome
There is a growing appreciation for the important roles microorganisms play in association
with plants. Microorganisms are drawn to distinct plant surfaces by the nutrient-rich …
with plants. Microorganisms are drawn to distinct plant surfaces by the nutrient-rich …
Control of nitrogen fixation in bacteria that associate with cereals
Legumes obtain nitrogen from air through rhizobia residing in root nodules. Some species of
rhizobia can colonize cereals but do not fix nitrogen on them. Disabling native regulation …
rhizobia can colonize cereals but do not fix nitrogen on them. Disabling native regulation …
Deciphering the omics of plant-microbe interaction: Perspectives and new insights
Introduction: Plants do not grow in isolation, rather they are hosts to a variety of microbes in
their natural environments. While, few thrive in the plants for their own benefit, others may …
their natural environments. While, few thrive in the plants for their own benefit, others may …
Integrating transcriptome and proteome profiling: Strategies and applications
Discovering the gene expression signature associated with a cellular state is one of the
basic quests in majority of biological studies. For most of the clinical and cellular …
basic quests in majority of biological studies. For most of the clinical and cellular …
The progress of multi-omics technologies: determining function in lactic acid bacteria using a systems level approach
ST O'Donnell, RP Ross, C Stanton - Frontiers in microbiology, 2020 - frontiersin.org
Lactic Acid Bacteria (LAB) have long been recognized as having a significant impact
ranging from commercial to health domains. A vast amount of research has been carried out …
ranging from commercial to health domains. A vast amount of research has been carried out …
Unraveling plant–microbe interactions: can multi-species transcriptomics help?
Plants in their natural habitats are surrounded by a large number of microorganisms. Some
microbes directly interact with plants in a mutually beneficial manner whereas others …
microbes directly interact with plants in a mutually beneficial manner whereas others …
Multidisciplinary approaches for studying rhizobium–legume symbioses
The rhizobium–legume symbiosis is a major source of fixed nitrogen (ammonia) in the
biosphere. The potential for this process to increase agricultural yield while reducing the …
biosphere. The potential for this process to increase agricultural yield while reducing the …
Two MicroRNAs Linked to Nodule Infection and Nitrogen-Fixing Ability in the Legume Lotus japonicus
Legumes overcome nitrogen shortage by develo** root nodules in which symbiotic
bacteria fix atmospheric nitrogen in exchange for host-derived carbohydrates and mineral …
bacteria fix atmospheric nitrogen in exchange for host-derived carbohydrates and mineral …
A genome‐scale metabolic reconstruction of soybean and Bradyrhizobium diazoefficiens reveals the cost–benefit of nitrogen fixation
BL Holland, ML Matthews, P Bota… - New …, 2023 - Wiley Online Library
Nitrogen‐fixing symbioses allow legumes to thrive in nitrogen‐poor soils at the cost of
diverting some photoassimilate to their microsymbionts. Effort is being made to bioengineer …
diverting some photoassimilate to their microsymbionts. Effort is being made to bioengineer …