Multi-omics data integration, interpretation, and its application

I Subramanian, S Verma, S Kumar… - … and biology insights, 2020 - journals.sagepub.com
To study complex biological processes holistically, it is imperative to take an integrative
approach that combines multi-omics data to highlight the interrelationships of the involved …

Overcoming cancer therapeutic bottleneck by drug repurposing

Z Zhang, L Zhou, N **e, EC Nice, T Zhang… - Signal transduction and …, 2020 - nature.com
Ever present hurdles for the discovery of new drugs for cancer therapy have necessitated
the development of the alternative strategy of drug repurposing, the development of old …

Large-scale public data reuse to model immunotherapy response and resistance

J Fu, K Li, W Zhang, C Wan, J Zhang, P Jiang, XS Liu - Genome medicine, 2020 - Springer
Despite growing numbers of immune checkpoint blockade (ICB) trials with available omics
data, it remains challenging to evaluate the robustness of ICB response and immune …

Signatures of T cell dysfunction and exclusion predict cancer immunotherapy response

P Jiang, S Gu, D Pan, J Fu, A Sahu, X Hu, Z Li… - Nature medicine, 2018 - nature.com
Cancer treatment by immune checkpoint blockade (ICB) can bring long-lasting clinical
benefits, but only a fraction of patients respond to treatment. To predict ICB response, we …

LinkedOmics: analyzing multi-omics data within and across 32 cancer types

SV Vasaikar, P Straub, J Wang… - Nucleic acids research, 2018 - academic.oup.com
The LinkedOmics database contains multi-omics data and clinical data for 32 cancer types
and a total of 11 158 patients from The Cancer Genome Atlas (TCGA) project. It is also the …

GlioVis data portal for visualization and analysis of brain tumor expression datasets

RL Bowman, Q Wang, A Carro, RGW Verhaak… - Neuro …, 2017 - academic.oup.com
We are currently living in the “genomic era.” In the last decade, high-throughput genomic
analyses have generated massive quantities of data that can be used to explore gene …

Unifying cancer and normal RNA sequencing data from different sources

Q Wang, J Armenia, C Zhang, AV Penson, E Reznik… - Scientific data, 2018 - nature.com
Driven by the recent advances of next generation sequencing (NGS) technologies and an
urgent need to decode complex human diseases, a multitude of large-scale studies were …

Enhancing GTEx by bridging the gaps between genotype, gene expression, and disease

Nature genetics, 2017 - nature.com
Genetic variants have been associated with myriad molecular phenotypes that provide new
insight into the range of mechanisms underlying genetic traits and diseases. Identifying any …

[HTML][HTML] Computational strategies for single-cell multi-omics integration

N Adossa, S Khan, KT Rytkönen, LL Elo - Computational and Structural …, 2021 - Elsevier
Single-cell omics technologies are currently solving biological and medical problems that
earlier have remained elusive, such as discovery of new cell types, cellular differentiation …

A single-nucleotide mutation within the TBX3 enhancer increased body size in Chinese horses

X Liu, Y Zhang, W Liu, Y Li, J Pan, Y Pu, J Han… - Current Biology, 2022 - cell.com
Chinese ponies are endemic to the mountainous areas of southwestern China and were first
reported in the archaeological record at the Royal Tomb of Zhongshan King, Mancheng …