Initiation of mRNA translation in bacteria: structural and dynamic aspects

CO Gualerzi, CL Pon - Cellular and Molecular Life Sciences, 2015 - Springer
Initiation of mRNA translation is a major checkpoint for regulating level and fidelity of protein
synthesis. Being rate limiting in protein synthesis, translation initiation also represents the …

Translational control of prokaryotic gene expression

JEG McCarthy, C Gualerzi - Trends in Genetics, 1990 - cell.com
Other than the start codon, the Shine-Dalgamo region is the only primary sequence element
that has been unequivocally demonstrated to be directly involved in translational initiation …

Secondary structure of the ribosome binding site determines translational efficiency: a quantitative analysis.

MH de Smit, J van Duin - Proceedings of the National …, 1990 - National Acad Sciences
We have quantitatively analyzed the relationship between translational efficiency and the
mRNA secondary structure in the initiation region. The stability of a defined hairpin structure …

Selective translation of leaderless mRNAs by specialized ribosomes generated by MazF in Escherichia coli

O Vesper, S Amitai, M Belitsky, K Byrgazov… - Cell, 2011 - cell.com
Escherichia coli (E. coli) mazEF is a stress-induced toxin-antitoxin (TA) module. The toxin
MazF is an endoribonuclease that cleaves single-stranded mRNAs at ACA sequences …

Translation initiation in Escherichia coli: sequences within the ribosome‐binding site

S Ringquist, S Shinedling, D Barrick… - Molecular …, 1992 - Wiley Online Library
The translational roles of the Shine‐Dalgarno sequence, the initiation codon, the space
between them, and the second codon have been studied. The Shine Dalgarno sequence …

Kinetic determinants of high-fidelity tRNA discrimination on the ribosome

KB Gromadski, MV Rodnina - Molecular cell, 2004 - cell.com
The ribosome selects aminoacyl-tRNA (aa-tRNA) matching to the mRNA codon from the
bulk of nonmatching aa-tRNAs in two consecutive selection steps, initial selection and …

Small RNA binding to 5′ mRNA coding region inhibits translational initiation

M Bouvier, CM Sharma, F Mika, KH Nierhaus, J Vogel - Molecular cell, 2008 - cell.com
Small noncoding RNAs (sRNAs) have predominantly been shown to repress bacterial
mRNAs by masking the Shine-Dalgarno (SD) or AUG start codon sequence, thereby …

[HTML][HTML] Release factor RF3 in E. coli accelerates the dissociation of release factors RF1 and RF2 from the ribosome in a GTP‐dependent manner

DV Freistroffer, MY Pavlov, J MacDougall… - The EMBO …, 1997 - embopress.org
Ribosomes complexed with synthetic mRNA and peptidyl‐tRNA, ready for peptide release,
were purified by gel filtration and used to study the function of release factor RF3 and …

Correlation of mRNA Expression and Protein Abundance Affected by Multiple Sequence Features Related to Translational Efficiency in Desulfovibrio vulgaris: A …

L Nie, G Wu, W Zhang - Genetics, 2006 - academic.oup.com
The modest correlation between mRNA expression and protein abundance in large-scale
data sets is explained in part by experimental challenges, such as technological limitations …

Conformational switch in the decoding region of 16S rRNA during aminoacyl-tRNA selection on the ribosome

T Pape, W Wintermeyer, MV Rodnina - Nature structural biology, 2000 - nature.com
Binding of aminoglycoside antibiotics to 16S ribosomal RNA induces a particular structure of
the decoding center and increases the misincorporation of near-cognate amino acids. By …