Structure-based drug design with equivariant diffusion models

A Schneuing, C Harris, Y Du, K Didi… - Nature Computational …, 2024 - nature.com
Abstract Structure-based drug design (SBDD) aims to design small-molecule ligands that
bind with high affinity and specificity to pre-determined protein targets. Generative SBDD …

Equivariant 3D-conditional diffusion model for molecular linker design

I Igashov, H Stärk, C Vignac, A Schneuing… - Nature Machine …, 2024 - nature.com
Fragment-based drug discovery has been an effective paradigm in early-stage drug
development. An open challenge in this area is designing linkers between disconnected …

Integrating Artificial Intelligence for Drug Discovery in the Context of Revolutionizing Drug Delivery

AI Visan, I Negut - Life, 2024 - mdpi.com
Drug development is expensive, time-consuming, and has a high failure rate. In recent
years, artificial intelligence (AI) has emerged as a transformative tool in drug discovery …

Artificial intelligence in drug development

K Zhang, X Yang, Y Wang, Y Yu, N Huang, G Li, X Li… - Nature Medicine, 2025 - nature.com
Drug development is a complex and time-consuming endeavor that traditionally relies on the
experience of drug developers and trial-and-error experimentation. The advent of artificial …

DrugFlow: an AI-driven one-stop platform for innovative drug discovery

C Shen, J Song, CY Hsieh, D Cao, Y Kang… - Journal of Chemical …, 2024 - ACS Publications
Artificial intelligence (AI)-aided drug design has demonstrated unprecedented effects on
modern drug discovery, but there is still an urgent need for user-friendly interfaces that …

FragGen: towards 3D geometry reliable fragment-based molecular generation

O Zhang, Y Huang, S Cheng, M Yu, X Zhang, H Lin… - Chemical …, 2024 - pubs.rsc.org
3D structure-based molecular generation is a successful application of generative AI in drug
discovery. Most earlier models follow an atom-wise paradigm, generating molecules with …

Durian: A Comprehensive Benchmark for Structure-Based 3D Molecular Generation

D Nie, H Zhao, O Zhang, G Weng… - Journal of Chemical …, 2024 - ACS Publications
Three-dimensional (3D) molecular generation models employ deep neural networks to
simultaneously generate both topological representation and molecular conformations. Due …

Efficient generation of protein pockets with PocketGen

Z Zhang, WX Shen, Q Liu, M Zitnik - Nature Machine Intelligence, 2024 - nature.com
Designing protein-binding proteins is critical for drug discovery. However, artificial-
intelligence-based design of such proteins is challenging due to the complexity of protein …

Genetic Algorithm-Based Receptor Ligand: A Genetic Algorithm-Guided Generative Model to Boost the Novelty and Drug-Likeness of Molecules in a Sampling …

M Wang, Z Wu, J Wang, G Weng, Y Kang… - Journal of Chemical …, 2024 - ACS Publications
Deep learning-based de novo molecular design has recently gained significant attention.
While numerous DL-based generative models have been successfully developed for …

ClickGen: Directed exploration of synthesizable chemical space via modular reactions and reinforcement learning

M Wang, S Li, J Wang, O Zhang, H Du, D Jiang… - Nature …, 2024 - nature.com
Despite the significant potential of generative models, low synthesizability of many
generated molecules limits their real-world applications. In response to this issue, we …