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Water at charged interfaces
The ubiquity of aqueous solutions in contact with charged surfaces and the realization that
the molecular-level details of water–surface interactions often determine interfacial functions …
the molecular-level details of water–surface interactions often determine interfacial functions …
Computational modeling of realistic cell membranes
Cell membranes contain a large variety of lipid types and are crowded with proteins,
endowing them with the plasticity needed to fulfill their key roles in cell functioning. The …
endowing them with the plasticity needed to fulfill their key roles in cell functioning. The …
Lipid21: complex lipid membrane simulations with AMBER
We extend the modular AMBER lipid force field to include anionic lipids, polyunsaturated
fatty acid (PUFA) lipids, and sphingomyelin, allowing the simulation of realistic cell …
fatty acid (PUFA) lipids, and sphingomyelin, allowing the simulation of realistic cell …
Life in the lumen: The multivesicular endosome
J Gruenberg - Traffic, 2020 - Wiley Online Library
The late endosomes/endo‐lysosomes of vertebrates contain an atypical phospholipid,
lysobisphosphatidic acid (LBPA)(also termed bis [monoacylglycero] phosphate [BMP]) …
lysobisphosphatidic acid (LBPA)(also termed bis [monoacylglycero] phosphate [BMP]) …
A practical guide to biologically relevant molecular simulations with charge scaling for electronic polarization
Molecular simulations can elucidate atomistic-level mechanisms of key biological
processes, which are often hardly accessible to experiment. However, the results of the …
processes, which are often hardly accessible to experiment. However, the results of the …
Charge scaling manifesto: A way of reconciling the inherently macroscopic and microscopic natures of molecular simulations
BJ Kirby, P Jungwirth - The journal of physical chemistry letters, 2019 - ACS Publications
Electronic polarization effects play an important role in the interactions of charged species in
biologically relevant aqueous solutions, such as those involving salt ions, proteins, nucleic …
biologically relevant aqueous solutions, such as those involving salt ions, proteins, nucleic …
Effective inclusion of electronic polarization improves the description of electrostatic interactions: The prosECCo75 biomolecular force field
prosECCo75 is an optimized force field effectively incorporating electronic polarization via
charge scaling. It aims to enhance the accuracy of nominally nonpolarizable molecular …
charge scaling. It aims to enhance the accuracy of nominally nonpolarizable molecular …
Quantitative comparison against experiments reveals imperfections in force fields' descriptions of popc–cholesterol interactions
Cholesterol is a central building block in biomembranes, where it induces orientational
order, slows diffusion, renders the membrane stiffer, and drives domain formation. Molecular …
order, slows diffusion, renders the membrane stiffer, and drives domain formation. Molecular …
Molecular dynamics simulations of the effects of lipid oxidation on the permeability of cell membranes
The formation of transient pores in their membranes is a well-known mechanism of
permeabilization of cells exposed to high-intensity electric pulses. However, the formation of …
permeabilization of cells exposed to high-intensity electric pulses. However, the formation of …
Superlubricity of zwitterionic bottlebrush polymers in the presence of multivalent ions
In this study, we report lubrication properties of physisorbed zwitterionic bottlebrush
polymers in the presence of multivalent ions using the surface force apparatus. Unlike …
polymers in the presence of multivalent ions using the surface force apparatus. Unlike …