DNA barcoding, an effective tool for species identification: a review

S Antil, JS Abraham, S Sripoorna, S Maurya… - Molecular biology …, 2023 - Springer
DNA barcoding is a powerful taxonomic tool to identify and discover species. DNA
barcoding utilizes one or more standardized short DNA regions for taxon identification. With …

The role of Enterobacteriaceae in gut microbiota dysbiosis in inflammatory bowel diseases

V Baldelli, F Scaldaferri, L Putignani, F Del Chierico - Microorganisms, 2021 - mdpi.com
Inflammatory bowel diseases (IBDs) are a group of chronic gastrointestinal inflammatory
diseases with unknown etiology. There is a combination of well documented factors in their …

The human oral microbiome in health and disease: from sequences to ecosystems

JR Willis, T Gabaldón - Microorganisms, 2020 - mdpi.com
The human oral cavity is home to an abundant and diverse microbial community (ie, the oral
microbiome), whose composition and roles in health and disease have been the focus of …

Phylogenies of the 16S rRNA gene and its hypervariable regions lack concordance with core genome phylogenies

HB Hassler, B Probert, C Moore, E Lawson… - Microbiome, 2022 - Springer
Abstract Background The 16S rRNA gene is used extensively in bacterial phylogenetics, in
species delineation, and now widely in microbiome studies. However, the gene suffers from …

MBPD: A multiple bacterial pathogen detection pipeline for One Health practices

X Yang, G Jiang, Y Zhang, N Wang, Y Zhang, X Wang… - Imeta, 2023 - Wiley Online Library
Bacterial pathogens are one of the major threats to biosafety and environmental health, and
advanced assessment is a prerequisite to combating bacterial pathogens. Currently, 16S …

RNA-based amplicon sequencing is ineffective in measuring metabolic activity in environmental microbial communities

Y Wang, KN Thompson, Y Yan, MI Short, Y Zhang… - Microbiome, 2023 - Springer
Background Characterization of microbial activity is essential to the understanding of the
basic biology of microbial communities, as the function of a microbiome is defined by its …

Bio‐Functionalized Manganese Nanoparticles Suppress Fusarium Wilt in Watermelon (Citrullus lanatus L.) by Infection Disruption, Host Defense Response …

M Noman, T Ahmed, U Ijaz, M Shahid, MM Nazir… - Small, 2023 - Wiley Online Library
The use of nanofabricated materials is being explored for the potential in crop disease
management. Chemically synthesized micronutrient nanoparticles (NPs) have been shown …

[HTML][HTML] Salicylic acid-doped iron nano-biostimulants potentiate defense responses and suppress Fusarium wilt in watermelon

M Noman, T Ahmed, M Shahid, MM Nazir, D Li… - Journal of Advanced …, 2024 - Elsevier
Introduction Chemo-and bio-genic metallic nanoparticles (NPs), as a novel nano-enabled
strategy, have demonstrated a great potential in crop health management. Objective The …

Bacillus altitudinis‐Stabilized Multifarious Copper Nanoparticles Prevent Bacterial Fruit Blotch in Watermelon (Citrullus lanatus L.): Direct Pathogen Inhibition, In …

M Noman, T Ahmed, JC White, MM Nazir, Azizullah… - Small, 2023 - Wiley Online Library
The nano‐enabled crop protecting agents have been emerging as a cost‐effective, eco‐
friendly, and sustainable alternative to conventional chemical pesticides. Here, the …

Modularity and diversity of target selectors in Tn7 transposons

G Faure, M Saito, S Benler, I Peng, YI Wolf, J Strecker… - Molecular Cell, 2023 - cell.com
To spread, transposons must integrate into target sites without disruption of essential genes
while avoiding host defense systems. Tn7-like transposons employ multiple mechanisms for …