Genome editing with CRISPR–Cas nucleases, base editors, transposases and prime editors

AV Anzalone, LW Koblan, DR Liu - Nature biotechnology, 2020 - nature.com
The development of new CRISPR–Cas genome editing tools continues to drive major
advances in the life sciences. Four classes of CRISPR–Cas-derived genome editing agents …

Precision genome editing using cytosine and adenine base editors in mammalian cells

TP Huang, GA Newby, DR Liu - Nature protocols, 2021 - nature.com
Genome editing has transformed the life sciences and has exciting prospects for use in
treating genetic diseases. Our laboratory developed base editing to enable precise and …

Evaluation and minimization of Cas9-independent off-target DNA editing by cytosine base editors

JL Doman, A Raguram, GA Newby, DR Liu - Nature biotechnology, 2020 - nature.com
Cytosine base editors (CBEs) enable targeted C• G-to-T• A conversions in genomic DNA.
Recent studies report that BE3, the original CBE, induces a low frequency of genome-wide …

Base editing screens map mutations affecting interferon-γ signaling in cancer

MA Coelho, S Cooper, ME Strauss, E Karakoc… - Cancer Cell, 2023 - cell.com
Summary Interferon-γ (IFN-γ) signaling mediates host responses to infection, inflammation
and anti-tumor immunity. Mutations in the IFN-γ signaling pathway cause immunological …

Novel WRN helicase inhibitors selectively target microsatellite-unstable cancer cells

G Picco, Y Rao, A Al Saedi, Y Lee, SF Vieira… - Cancer …, 2024 - aacrjournals.org
Microsatellite-unstable (MSI) cancers require WRN helicase to resolve replication stress due
to expanded DNA (TA) n dinucleotide repeats. WRN is a promising synthetic lethal target for …

[HTML][HTML] Base editing screens define the genetic landscape of cancer drug resistance mechanisms

MA Coelho, ME Strauss, A Watterson, S Cooper… - Nature Genetics, 2024 - nature.com
Drug resistance is a principal limitation to the long-term efficacy of cancer therapies. Cancer
genome sequencing can retrospectively delineate the genetic basis of drug resistance, but …

Multimodal scanning of genetic variants with base and prime editing

O Belli, K Karava, R Farouni, RJ Platt - Nature Biotechnology, 2024 - nature.com
Mutational scanning connects genetic variants to phenotype, enabling the interrogation of
protein functions, interactions and variant pathogenicity. However, current methodologies …

The design and application of DNA-editing enzymes as base editors

KL Rallapalli, AC Komor - Annual review of biochemistry, 2023 - annualreviews.org
DNA-editing enzymes perform chemical reactions on DNA nucleobases. These reactions
can change the genetic identity of the modified base or modulate gene expression. Interest …

CRISPR GUARD protects off-target sites from Cas9 nuclease activity using short guide RNAs

MA Coelho, E De Braekeleer, M Firth, M Bista… - Nature …, 2020 - nature.com
Precise genome editing using CRISPR-Cas9 is a promising therapeutic avenue for genetic
diseases, although off-target editing remains a significant safety concern. Guide RNAs …

Rescue of hearing by adenine base editing in a humanized mouse model of Usher syndrome type 1F

CW Peters, KS Hanlon, MV Ivanchenko, E Zinn… - Molecular Therapy, 2023 - cell.com
Usher syndrome type 1F (USH1F), characterized by congenital lack of hearing and balance
and progressive loss of vision, is caused by mutations in the PCDH15 gene. In the …