[HTML][HTML] Challenges for biophysical modeling of microstructure

IO Jelescu, M Palombo, F Bagnato… - Journal of Neuroscience …, 2020 - Elsevier
The biophysical modeling efforts in diffusion MRI have grown considerably over the past 25
years. In this review, we dwell on the various challenges along the journey of bringing a …

A survey of methods for 3D histology reconstruction

J Pichat, JE Iglesias, T Yousry, S Ourselin… - Medical image analysis, 2018 - Elsevier
Histology permits the observation of otherwise invisible structures of the internal topography
of a specimen. Although it enables the investigation of tissues at a cellular level, it is invasive …

Limits to anatomical accuracy of diffusion tractography using modern approaches

KG Schilling, V Nath, C Hansen, P Parvathaneni… - Neuroimage, 2019 - Elsevier
Diffusion MRI fiber tractography is widely used to probe the structural connectivity of the
brain, with a range of applications in both clinical and basic neuroscience. Despite …

Histological validation of diffusion MRI fiber orientation distributions and dispersion

KG Schilling, V Janve, Y Gao, I Stepniewska… - Neuroimage, 2018 - Elsevier
Diffusion magnetic resonance imaging (dMRI) is widely used to probe tissue microstructure,
and is currently the only non-invasive way to measure the brain's fiber architecture. While a …

[HTML][HTML] Post mortem map** of connectional anatomy for the validation of diffusion MRI

A Yendiki, M Aggarwal, M Axer, AFD Howard… - Neuroimage, 2022 - Elsevier
Diffusion MRI (dMRI) is a unique tool for the study of brain circuitry, as it allows us to image
both the macroscopic trajectories and the microstructural properties of axon bundles in vivo …

Histological validation of high-resolution DTI in human post mortem tissue

A Seehaus, A Roebroeck, M Bastiani… - Frontiers in …, 2015 - frontiersin.org
Diffusion tensor imaging (DTI) is amongst the simplest mathematical models available for
diffusion magnetic resonance imaging, yet still by far the most used one. Despite the …

Confirmation of a gyral bias in diffusion MRI fiber tractography

K Schilling, Y Gao, V Janve, I Stepniewska… - Human brain …, 2018 - Wiley Online Library
Diffusion MRI fiber tractography has been increasingly used to map the structural
connectivity of the human brain. However, this technique is not without limitations; for …

Histology-derived volumetric annotation of the human hippocampal subfields in postmortem MRI

DH Adler, J Pluta, S Kadivar, C Craige, JC Gee… - Neuroimage, 2014 - Elsevier
Recently, there has been a growing effort to analyze the morphometry of hippocampal
subfields using both in vivo and postmortem magnetic resonance imaging (MRI). However …

Towards a comprehensive atlas of cortical connections in a primate brain: Map** tracer injection studies of the common marmoset into a reference digital template

P Majka, TA Chaplin, HH Yu, A Tolpygo… - Journal of …, 2016 - Wiley Online Library
The marmoset is an emerging animal model for large‐scale attempts to understand primate
brain connectivity, but achieving this aim requires the development and validation of …