Molecular strategies to prevent, inhibit, and degrade advanced glycoxidation and advanced lipoxidation end products

G Aldini, G Vistoli, M Stefek, N Chondrogianni… - Free radical …, 2013 - Taylor & Francis
The advanced glycoxidation end products (AGEs) and lipoxidation end products (ALEs)
contribute to the development of diabetic complications and of other pathologies. The review …

Fluorinated elements of Group 15 as pnictogen bond donor sites

P Scilabra, G Terraneo, G Resnati - Journal of Fluorine Chemistry, 2017 - Elsevier
The presence of fluorine atom (s) in a molecule makes the σ-hole potentials of surrounding
atoms more positive and thus increases their tendencies to interact attractively with …

Halogen bond: its role beyond drug–target binding affinity for drug discovery and development

Z Xu, Z Yang, Y Liu, Y Lu, K Chen… - Journal of chemical …, 2014 - ACS Publications
Halogen bond has attracted a great deal of attention in the past years for hit-to-lead-to-
candidate optimization aiming at improving drug-target binding affinity. In general, heavy …

Automated and efficient generation of general molecular aggregate structures

C Plett, S Grimme - Angewandte Chemie International Edition, 2023 - Wiley Online Library
Modeling intermolecular interactions of complex non‐covalent structures is important in
many areas of chemistry. To facilitate the generation of reasonable dimer, oligomer, and …

N+-CH···O Hydrogen bonds in protein-ligand complexes

Y Itoh, Y Nakashima, S Tsukamoto, T Kurohara… - Scientific reports, 2019 - nature.com
In the context of drug design, CH··· O hydrogen bonds have received little attention so far,
mostly because they are considered weak relative to other noncovalent interactions such as …

Aromatic interactions at the ligand–protein interface: Implications for the development of docking scoring functions

M Brylinski - Chemical biology & drug design, 2018 - Wiley Online Library
The ability to design and fine‐tune non‐covalent interactions between organic ligands and
proteins is indispensable to rational drug development. Aromatic stacking has long been …

Machine annealing‐guided navigation of antihypertensive food peptide selectivity between human ACE N‐and C‐domains in structurally interacting diversity space

L Mei, S Shang, S Wang, H Ye… - Journal of Molecular …, 2023 - Wiley Online Library
Human angiotensin‐converting enzyme (ACE) is a well‐established druggable target for the
treatment of hypertension (HTN), which contains two structurally homologous but …

Self-binding peptides: folding or binding?

C Yang, S Zhang, P He, C Wang… - Journal of Chemical …, 2015 - ACS Publications
Self-binding peptides (SBPs) represent those short peptide segments within monomeric
proteins to fulfill their biological functions by dynamically binding to/unbinding from their …

Structural modeling of HLA-B* 1502/peptide/carbamazepine/T-cell receptor complex architecture: implication for the molecular mechanism of carbamazepine-induced …

P Zhou, S Zhang, Y Wang, C Yang… - Journal of Biomolecular …, 2016 - Taylor & Francis
Drug-induced adverse reactions are a significant problem in healthcare worldwide and are
estimated to cost billions of dollars annually in the United States. A portion of such reactions …

A two-step binding mechanism for the self-binding peptide recognition of target domains

C Yang, S Zhang, Z Bai, S Hou, D Wu, J Huang… - Molecular …, 2016 - pubs.rsc.org
Self-binding peptides (SBPs) represent a novel biomolecular phenomenon spanning
between folding and binding, where a short peptide segment within a monomeric protein …