Analysis of scalable data-privatization threading algorithms for hybrid MPI/OpenMP parallelization of molecular dynamics

M Kunaseth, DF Richards, JN Glosli, RK Kalia… - The Journal of …, 2013 - Springer
We propose and analyze threading algorithms for hybrid MPI/OpenMP parallelization of a
molecular-dynamics simulation, which are scalable on large multicore clusters. Two data …

HCCache: a hybrid client-side cache management scheme for I/O-intensive workloads in network-based file systems

X Li, B Dong, L **ao, L Ruan… - 2012 13th International …, 2012 - ieeexplore.ieee.org
Client-side caching is an effective technique to improve I/O performance in network-based
file systems. However, current block-indexed caching structure suffers from cache efficiency …

Comparison of redundancy schemes for distributed storage systems

P Sobe, K Peter - Fifth IEEE International Symposium on …, 2006 - ieeexplore.ieee.org
Reliable distributed data storage systems have to employ redundancy codes to tolerate the
loss of storages. Many appropriate codes and algorithms can be found in the literature, but …

Online mesh refinement for parallel atmospheric models

C Schepke, N Maillard, J Schneider… - International Journal of …, 2013 - Springer
Forecast precisions of climatological models are limited by computing power and time
available for the executions. As more and faster processors are used in the computation, the …

Towards hybrid client-side cache management in network-based file systems

X Li, L **ao, X Ke, B Dong, R Li, D Liu - Computer Science and …, 2014 - doiserbia.nb.rs
Client-side caching is an effective technique to hide network latency and improve I/O
performance in network-based file systems. Current methods mainly adopt block-indexed …

Improving atmospheric model performance on a multi-core cluster system

C Osthoff, RP Souto, F Vilasbôas… - Atmospheric Model …, 2012 - books.google.com
Numerical models have been used extensively in the last decades to understand and
predict weather phenomena and the climate. In general, models are classified according to …

Trace-based visualization as a tool to understand applications' I/O performance in multi-core machines

RV Kassick, FZ Boito, M Diener… - … on Architecture and …, 2011 - ieeexplore.ieee.org
This paper presents the use of trace-based performance visualization of a large scale
atmospheric model, the Ocean-Land-Atmosphere Model (OLAM). The trace was obtained …

Improving OLAM with Cloud Elasticity

G Galante, LCE De Bona, C Schepke - … , Portugal, June 30–July 3, 2014 …, 2014 - Springer
Elasticity is considered one of the fundamental properties of cloud computing, and can be
seen as the ability of a system to increase or decrease the computing resources allocated in …

Transversal I/O Scheduling: from applications to devices

FZ Boito - 2015 - theses.hal.science
This thesis focuses on I/O scheduling as a tool to improve I/O performance on parallel file
systemsby alleviating interference effects. It is usual for High Performance Computing (HPC) …

Atmospheric model cluster performance evaluation on hybrid MPI/OpenMP/Cuda programming model platform

C Osthoff, RP Souto, PLS Dias… - … Conference of the …, 2012 - ieeexplore.ieee.org
This work discuss the parallel performance of a global numerical simulation model, Ocean-
Land-Atmosphere Model (OLAM), on a hybrid multicore/GPU cluster environment, under the …