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On compressing and indexing repetitive sequences
S Kreft, G Navarro - Theoretical Computer Science, 2013 - Elsevier
We introduce LZ-End, a new member of the Lempel–Ziv family of text compressors, which
achieves compression ratios close to those of LZ77 but is much faster at extracting arbitrary …
achieves compression ratios close to those of LZ77 but is much faster at extracting arbitrary …
Algorithmics on SLP-compressed strings: A survey
M Lohrey - Groups-Complexity-Cryptology, 2012 - degruyter.com
Results on algorithmic problems on strings that are given in a compressed form via straight-
line programs are surveyed. A straight-line program is a context-free grammar that …
line programs are surveyed. A straight-line program is a context-free grammar that …
Searching and indexing genomic databases via kernelization
The rapid advance of DNA sequencing technologies has yielded databases of thousands of
genomes. To search and index these databases effectively, it is important that we take …
genomes. To search and index these databases effectively, it is important that we take …
A faster grammar-based self-index
To store and search genomic databases efficiently, researchers have recently started
building compressed self-indexes based on straight-line programs and LZ77. In this paper …
building compressed self-indexes based on straight-line programs and LZ77. In this paper …
LZ77-based self-indexing with faster pattern matching
To store and search genomic databases efficiently, researchers have recently started
building self-indexes based on LZ77. As the name suggests, a self-index for a string …
building self-indexes based on LZ77. As the name suggests, a self-index for a string …
Faster fully compressed pattern matching by recompression
A Jeż - ACM Transactions on Algorithms (TALG), 2015 - dl.acm.org
In this article, a fully compressed pattern matching problem is studied. The compression is
represented by straight-line programs (SLPs)—that is, context-free grammars generating …
represented by straight-line programs (SLPs)—that is, context-free grammars generating …
Improved grammar-based compressed indexes
We introduce the first grammar-compressed representation of a sequence that supports
searches in time that depends only logarithmically on the size of the grammar. Given a text T …
searches in time that depends only logarithmically on the size of the grammar. Given a text T …
Semi-local string comparison: Algorithmic techniques and applications
A Tiskin - Mathematics in Computer Science, 2008 - Springer
Given two strings, the longest common subsequence (LCS) problem consists in computing
the length of the longest string that is a subsequence of both input strings. Its generalisation …
the length of the longest string that is a subsequence of both input strings. Its generalisation …
Colored range queries and document retrieval
Colored range queries are a well-studied topic in computational geometry and database
research that, in the past decade, have found exciting applications in information retrieval. In …
research that, in the past decade, have found exciting applications in information retrieval. In …
[HTML][HTML] Fast relative Lempel–Ziv self-index for similar sequences
Recent advances in biotechnology and web technology are continuously generating huge
collections of similar strings. People now face the problem of storing them compactly while …
collections of similar strings. People now face the problem of storing them compactly while …