Polypharmacology: The science of multi-targeting molecules

A Kabir, A Muth - Pharmacological Research, 2022 - Elsevier
Polypharmacology is a concept where a molecule can interact with two or more targets
simultaneously. It offers many advantages as compared to the conventional single-targeting …

Drug metabolites and their effects on the development of adverse reactions: Revisiting Lipinski's Rule of Five

CM Chagas, S Moss, L Alisaraie - International journal of pharmaceutics, 2018 - Elsevier
Many studies have shown that toxicities of anticancer drugs and their adverse effects are
related to their chemical structure and high molecular weight that may result in a number of …

Integration of the Drug–Gene Interaction Database (DGIdb 4.0) with open crowdsource efforts

SL Freshour, S Kiwala, KC Cotto… - Nucleic acids …, 2021 - academic.oup.com
Abstract The Drug-Gene Interaction Database (DGIdb, www. dgidb. org) is a web resource
that provides information on drug-gene interactions and druggable genes from publications …

PLIP: fully automated protein–ligand interaction profiler

S Salentin, S Schreiber, VJ Haupt… - Nucleic acids …, 2015 - academic.oup.com
The characterization of interactions in protein–ligand complexes is essential for research in
structural bioinformatics, drug discovery and biology. However, comprehensive tools are not …

How beyond rule of 5 drugs and clinical candidates bind to their targets

BC Doak, J Zheng, D Dobritzsch… - Journal of medicinal …, 2016 - ACS Publications
To improve discovery of drugs for difficult targets, the opportunities of chemical space
beyond the rule of 5 (bRo5) were examined by retrospective analysis of a comprehensive …

Polypharmacology–foe or friend?

JU Peters - Journal of medicinal chemistry, 2013 - ACS Publications
Polypharmacology describes the activity of compounds at multiple targets. Current research
focuses on two aspects of polypharmacology:(1) unintended polypharmacology can lead to …

In silico methods to address polypharmacology: current status, applications and future perspectives

A Lavecchia, C Cerchia - Drug Discovery Today, 2016 - Elsevier
Highlights•Polypharmacology and its exploitation for drug discovery is drawing increasing
interest.•Computational approaches have great potential for predicting the …

Computational multitarget drug design

W Zhang, J Pei, L Lai - Journal of chemical information and …, 2017 - ACS Publications
Designing drugs that can simultaneously interact with multiple targets is a promising
approach for treating complicated diseases. Compared to using combinations of single …

Virtual screening web servers: designing chemical probes and drug candidates in the cyberspace

N Singh, L Chaput, BO Villoutreix - Briefings in bioinformatics, 2021 - academic.oup.com
The interplay between life sciences and advancing technology drives a continuous cycle of
chemical data growth; these data are most often stored in open or partially open databases …

[PDF][PDF] An improved branch and bound algorithm for the maximum clique problem

J Konc, D Janezic - proteins, 2007 - insilab.org
A new algorithm for finding a maximum clique in an undirected graph is described. An
approximate coloring algorithm has been improved and used to provide bounds to the size …