A bountiful harvest: genomic insights into crop domestication phenotypes

KM Olsen, JF Wendel - Annual review of plant biology, 2013 - annualreviews.org
Human selection during crop domestication has resulted in remarkable transformations of
plant phenotypes, providing a window into the genetic basis of morphological evolution …

Transposable elements contribute to dynamic genome content in maize

SN Anderson, MC Stitzer, AB Brohammer… - The Plant …, 2019 - Wiley Online Library
Transposable elements (TE s) are ubiquitous components of eukaryotic genomes and can
create variation in genome organization and content. Most maize genomes are composed of …

The bright side of transposons in crop evolution

C Vitte, MA Fustier, K Alix… - Briefings in Functional …, 2014 - academic.oup.com
The past decades have revealed an unexpected yet prominent role of so-called 'junk DNA'in
the regulation of gene expression, thereby challenging our view of the mechanisms …

A MITE Transposon Insertion Is Associated with Differential Methylation at the Maize Flowering Time QTL Vgt1

S Castelletti, R Tuberosa, M Pindo… - G3: Genes, Genomes …, 2014 - academic.oup.com
One of the major quantitative trait loci for flowering time in maize, the Vegetative to
generative transition 1 (Vgt1) locus, corresponds to an upstream (70 kb) noncoding …

Structural variation and genome complexity: is dispensable really dispensable?

F Marroni, S Pinosio, M Morgante - Current Opinion in Plant Biology, 2014 - Elsevier
Highlights•Structural variants are the major components of dispensable genome.•Structural
variants might have important functional consequences.•Next generation sequencing is a …

Conservation and diversity of the pollen microbiome of Pan-American maize using PacBio and MiSeq

EM Khalaf, A Shrestha, M Reid, BJ McFadyen… - Frontiers in …, 2023 - frontiersin.org
Pollen is a vector for diversification, fitness-selection, and transmission of plant genetic
material. The extent to which the pollen microbiome may contribute to host diversification is …

Miniature Inverted-Repeat Transposable Elements: Small DNA Transposons That Have Contributed to Plant MICRORNA Gene Evolution

JL Pegler, JMJ Oultram, CWG Mann, BJ Carroll… - Plants, 2023 - mdpi.com
Angiosperms form the largest phylum within the Plantae kingdom and show remarkable
genetic variation due to the considerable difference in the nuclear genome size of each …

Genetic variability of aquaporin expression in maize: From eQTLs to a MITE insertion regulating PIP2;5 expression

LC Maistriaux, MJ Laurent, L Jeanguenin… - Plant …, 2024 - academic.oup.com
Plant aquaporins are involved in numerous physiological processes, such as cellular
homeostasis, tissue hydraulics, transpiration, and nutrient supply, and are key players of the …

Assessing the regulatory potential of transposable elements using chromatin accessibility profiles of maize transposons

JM Noshay, AP Marand, SN Anderson, P Zhou… - Genetics, 2021 - academic.oup.com
Transposable elements (TEs) have the potential to create regulatory variation both through
the disruption of existing DNA regulatory elements and through the creation of novel DNA …

Translational research: from pot to plot

H Nelissen, M Moloney, D Inzé - Plant biotechnology journal, 2014 - Wiley Online Library
Plant molecular biology has been the key driver to elucidate molecular pathways underlying
plant growth, development and stress responses during the past decades. Although this has …