Bioinformatics applications on apache spark
With the rapid development of next-generation sequencing technology, ever-increasing
quantities of genomic data pose a tremendous challenge to data processing. Therefore …
quantities of genomic data pose a tremendous challenge to data processing. Therefore …
[HTML][HTML] Bioinformatics for NGS-based metagenomics and the application to biogas research
Metagenomics has proven to be one of the most important research fields for microbial
ecology during the last decade. Starting from 16S rRNA marker gene analysis for the …
ecology during the last decade. Starting from 16S rRNA marker gene analysis for the …
The shared antibiotic resistome of soil bacteria and human pathogens
Soil microbiota represent one of the ancient evolutionary origins of antibiotic resistance and
have been proposed as a reservoir of resistance genes available for exchange with clinical …
have been proposed as a reservoir of resistance genes available for exchange with clinical …
Intestinal virome changes precede autoimmunity in type I diabetes-susceptible children
Viruses have long been considered potential triggers of autoimmune diseases. Here we
defined the intestinal virome from birth to the development of autoimmunity in children at risk …
defined the intestinal virome from birth to the development of autoimmunity in children at risk …
A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples
Unbiased next-generation sequencing (NGS) approaches enable comprehensive pathogen
detection in the clinical microbiology laboratory and have numerous applications for public …
detection in the clinical microbiology laboratory and have numerous applications for public …
Gut DNA viromes of Malawian twins discordant for severe acute malnutrition
The bacterial component of the human gut microbiota undergoes a definable program of
postnatal development. Evidence is accumulating that this program is disrupted in children …
postnatal development. Evidence is accumulating that this program is disrupted in children …
Ultrafast clustering algorithms for metagenomic sequence analysis
The rapid advances of high-throughput sequencing technologies dramatically prompted
metagenomic studies of microbial communities that exist at various environments …
metagenomic studies of microbial communities that exist at various environments …
WebMGA: a customizable web server for fast metagenomic sequence analysis
Background The new field of metagenomics studies microorganism communities by culture-
independent sequencing. With the advances in next-generation sequencing techniques …
independent sequencing. With the advances in next-generation sequencing techniques …
Western and non-western gut microbiomes reveal new roles of Prevotella in carbohydrate metabolism and mouth–gut axis
The abundance and diversity of host-associated Prevotella species have a profound impact
on human health. To investigate the composition, diversity, and functional roles of Prevotella …
on human health. To investigate the composition, diversity, and functional roles of Prevotella …
The unique composition of Indian gut microbiome, gene catalogue, and associated fecal metabolome deciphered using multi-omics approaches
Background Metagenomic studies carried out in the past decade have led to an enhanced
understanding of the gut microbiome in human health; however, the Indian gut microbiome …
understanding of the gut microbiome in human health; however, the Indian gut microbiome …