Characterizing and correcting for the effect of sensor noise in the dynamic mode decomposition
Dynamic mode decomposition (DMD) provides a practical means of extracting insightful
dynamical information from fluids datasets. Like any data processing technique, DMD's …
dynamical information from fluids datasets. Like any data processing technique, DMD's …
Machine learning for structure determination in single-particle cryo-electron microscopy: A systematic review
Recently, single-particle cryo-electron microscopy (cryo-EM) has become an indispensable
method for determining macromolecular structures at high resolution to deeply explore the …
method for determining macromolecular structures at high resolution to deeply explore the …
Rotationally invariant image representation for viewing direction classification in cryo-EM
We introduce a new rotationally invariant viewing angle classification method for identifying,
among a large number of cryo-EM projection images, similar views without prior knowledge …
among a large number of cryo-EM projection images, similar views without prior knowledge …
Method of moments for 3D single particle ab initio modeling with non-uniform distribution of viewing angles
Single-particle reconstruction in cryo-electron microscopy (cryo-EM) is an increasingly
popular technique for determining the 3D structure of a molecule from several noisy 2D …
popular technique for determining the 3D structure of a molecule from several noisy 2D …
Dyadic boundary points based empirical wavelet transform for the elimination of eye movement and eye blink-based ocular artifacts from EEG signals
The movement of eyeballs and eye blinks produces ocular artifacts in the
electroencephalogram (EEG) signal during recording. It is necessary to filter out these …
electroencephalogram (EEG) signal during recording. It is necessary to filter out these …
Achieving rotational invariance with bessel-convolutional neural networks
For many applications in image analysis, learning models that are invariant to translations
and rotations is paramount. This is the case, for example, in medical imaging where the …
and rotations is paramount. This is the case, for example, in medical imaging where the …
Mathematics for cryo-electron microscopy
A Singer - Proceedings of the International Congress of …, 2018 - World Scientific
Single-particle cryo-electron microscopy (cryo-EM) has recently joined X-ray crystallography
and NMR spectroscopy as a high-resolution structural method for biological …
and NMR spectroscopy as a high-resolution structural method for biological …
Fast steerable principal component analysis
Cryo-electron microscopy nowadays often requires the analysis of hundreds of thousands of
2-D images as large as a few hundred pixels in each direction. Here, we introduce an …
2-D images as large as a few hundred pixels in each direction. Here, we introduce an …
A guided tour of selected image processing and analysis methods for fluorescence and electron microscopy
Microscopy imaging, including fluorescence micro scopy and electron microscopy, has
taken a prominent role in life science research and medicine due to its ability to investigate …
taken a prominent role in life science research and medicine due to its ability to investigate …
Covariance matrix estimation for the cryo-EM heterogeneity problem
In cryo-electron microscopy (cryo-EM), a microscope generates a top view of a sample of
randomly oriented copies of a molecule. The problem of single particle reconstruction (SPR) …
randomly oriented copies of a molecule. The problem of single particle reconstruction (SPR) …